Gene : AT3G54210 A. thaliana TAIR10
Defline:  (1 of 3) K02879 - large subunit ribosomal protein L17 (RP-L17, MRPL17, rplQ) Genomic Order:  4460
Name:  ? AT3G54210 Secondary Identifier:  ? PAC:19660183
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54210 0.5kb upstream 0.5kb upstream 1396 true Chr3: 20067540-20068935 Arabidopsis thaliana
AT3G54210 0.5kb upstream 0.5kb upstream 500 false Chr3: 20068436-20068935 Arabidopsis thaliana
AT3G54210 0.5kb downstream 0.5kb downstream 1396 true Chr3: 20067040-20068435 Arabidopsis thaliana
AT3G54210 0.5kb downstream 0.5kb downstream 500 false Chr3: 20067040-20067539 Arabidopsis thaliana
AT3G54210 1.0kb upstream 1.0kb upstream 1896 true Chr3: 20067540-20069435 Arabidopsis thaliana
AT3G54210 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20068436-20069435 Arabidopsis thaliana
AT3G54210 1.0kb downstream 1.0kb downstream 1896 true Chr3: 20066540-20068435 Arabidopsis thaliana
AT3G54210 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20066540-20067539 Arabidopsis thaliana
AT3G54210 2.0kb upstream 2.0kb upstream 2896 true Chr3: 20067540-20070435 Arabidopsis thaliana
AT3G54210 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20068436-20070435 Arabidopsis thaliana
AT3G54210 2.0kb downstream 2.0kb downstream 2896 true Chr3: 20065540-20068435 Arabidopsis thaliana
AT3G54210 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20065540-20067539 Arabidopsis thaliana
AT3G54210 5.0kb upstream 5.0kb upstream 5896 true Chr3: 20067540-20073435 Arabidopsis thaliana
AT3G54210 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20068436-20073435 Arabidopsis thaliana
AT3G54210 5.0kb downstream 5.0kb downstream 5896 true Chr3: 20062540-20068435 Arabidopsis thaliana
AT3G54210 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20062540-20067539 Arabidopsis thaliana
AT3G54210 10.0kb upstream 10.0kb upstream 10896 true Chr3: 20067540-20078435 Arabidopsis thaliana
AT3G54210 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20068436-20078435 Arabidopsis thaliana
AT3G54210 10.0kb downstream 10.0kb downstream 10896 true Chr3: 20057540-20068435 Arabidopsis thaliana
AT3G54210 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20057540-20067539 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041076 5273 Angiosperm View MSA
122374979 5261 Brassicaceae View MSA
123830733 5264 Brassicales-Malvales View MSA
124339212 5266 SBM View MSA
124250957 5268 Malvidae View MSA
124060551 5270 Rosid View MSA
123743536 5271 Pentapetalae View MSA
122789668 5272 Eudicot View MSA
121346945 5274 Embryophyte View MSA
123426570 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 334.306     High  
cufflinks 20.848        
cufflinks 421.729     High High
cufflinks 22.939        
cufflinks 327.976     High  
cufflinks 20.715        

0 Strain