Gene : PAS1 A. thaliana TAIR10
Primary Identifier:  ? AT3G54010 Defline:  (1 of 1) PTHR10516//PTHR10516:SF268 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE // PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PASTICCINO1
Genomic Order:  4439 Name:  ? AT3G54010
Secondary Identifier:  ? PAC:19658845
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54010 0.5kb upstream 0.5kb upstream 4823 true Chr3: 20000361-20005183 Arabidopsis thaliana
AT3G54010 0.5kb upstream 0.5kb upstream 500 false Chr3: 20000361-20000860 Arabidopsis thaliana
AT3G54010 0.5kb downstream 0.5kb downstream 4823 true Chr3: 20000861-20005683 Arabidopsis thaliana
AT3G54010 0.5kb downstream 0.5kb downstream 500 false Chr3: 20005184-20005683 Arabidopsis thaliana
AT3G54010 1.0kb upstream 1.0kb upstream 5323 true Chr3: 19999861-20005183 Arabidopsis thaliana
AT3G54010 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19999861-20000860 Arabidopsis thaliana
AT3G54010 1.0kb downstream 1.0kb downstream 5323 true Chr3: 20000861-20006183 Arabidopsis thaliana
AT3G54010 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20005184-20006183 Arabidopsis thaliana
AT3G54010 2.0kb upstream 2.0kb upstream 6323 true Chr3: 19998861-20005183 Arabidopsis thaliana
AT3G54010 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19998861-20000860 Arabidopsis thaliana
AT3G54010 2.0kb downstream 2.0kb downstream 6323 true Chr3: 20000861-20007183 Arabidopsis thaliana
AT3G54010 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20005184-20007183 Arabidopsis thaliana
AT3G54010 5.0kb upstream 5.0kb upstream 9323 true Chr3: 19995861-20005183 Arabidopsis thaliana
AT3G54010 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19995861-20000860 Arabidopsis thaliana
AT3G54010 5.0kb downstream 5.0kb downstream 9323 true Chr3: 20000861-20010183 Arabidopsis thaliana
AT3G54010 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20005184-20010183 Arabidopsis thaliana
AT3G54010 10.0kb upstream 10.0kb upstream 14323 true Chr3: 19990861-20005183 Arabidopsis thaliana
AT3G54010 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19990861-20000860 Arabidopsis thaliana
AT3G54010 10.0kb downstream 10.0kb downstream 14323 true Chr3: 20000861-20015183 Arabidopsis thaliana
AT3G54010 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20005184-20015183 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361836 5261 Brassicaceae View MSA
123833101 5264 Brassicales-Malvales View MSA
124341498 5266 SBM View MSA
124250608 5268 Malvidae View MSA
124061046 5270 Rosid View MSA
123741397 5271 Pentapetalae View MSA
122792989 5272 Eudicot View MSA
122041915 5273 Angiosperm View MSA
121346304 5274 Embryophyte View MSA
123424056 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.786        
cufflinks 8.771        
cufflinks 6.389       Low
cufflinks 9.812       High
cufflinks 7.346        
cufflinks 9.031        

0 Strain