Gene : AT3G53940 A. thaliana TAIR10
Defline:  (1 of 14) KOG0752 - Mitochondrial solute carrier protein Genomic Order:  4432
Name:  ? AT3G53940 Secondary Identifier:  ? PAC:19663364
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53940 0.5kb upstream 0.5kb upstream 3251 true Chr3: 19971019-19974269 Arabidopsis thaliana
AT3G53940 0.5kb upstream 0.5kb upstream 500 false Chr3: 19973770-19974269 Arabidopsis thaliana
AT3G53940 0.5kb downstream 0.5kb downstream 3251 true Chr3: 19970519-19973769 Arabidopsis thaliana
AT3G53940 0.5kb downstream 0.5kb downstream 500 false Chr3: 19970519-19971018 Arabidopsis thaliana
AT3G53940 1.0kb upstream 1.0kb upstream 3751 true Chr3: 19971019-19974769 Arabidopsis thaliana
AT3G53940 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19973770-19974769 Arabidopsis thaliana
AT3G53940 1.0kb downstream 1.0kb downstream 3751 true Chr3: 19970019-19973769 Arabidopsis thaliana
AT3G53940 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19970019-19971018 Arabidopsis thaliana
AT3G53940 2.0kb upstream 2.0kb upstream 4751 true Chr3: 19971019-19975769 Arabidopsis thaliana
AT3G53940 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19973770-19975769 Arabidopsis thaliana
AT3G53940 2.0kb downstream 2.0kb downstream 4751 true Chr3: 19969019-19973769 Arabidopsis thaliana
AT3G53940 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19969019-19971018 Arabidopsis thaliana
AT3G53940 5.0kb upstream 5.0kb upstream 7751 true Chr3: 19971019-19978769 Arabidopsis thaliana
AT3G53940 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19973770-19978769 Arabidopsis thaliana
AT3G53940 5.0kb downstream 5.0kb downstream 7751 true Chr3: 19966019-19973769 Arabidopsis thaliana
AT3G53940 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19966019-19971018 Arabidopsis thaliana
AT3G53940 10.0kb upstream 10.0kb upstream 12751 true Chr3: 19971019-19983769 Arabidopsis thaliana
AT3G53940 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19973770-19983769 Arabidopsis thaliana
AT3G53940 10.0kb downstream 10.0kb downstream 12751 true Chr3: 19961019-19973769 Arabidopsis thaliana
AT3G53940 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19961019-19971018 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369140 5261 Brassicaceae View MSA
123832355 5264 Brassicales-Malvales View MSA
124342684 5266 SBM View MSA
124243704 5268 Malvidae View MSA
124069911 5270 Rosid View MSA
123736580 5271 Pentapetalae View MSA
122788448 5272 Eudicot View MSA
122045339 5273 Angiosperm View MSA
123429077 5275 Viridiplantae View MSA
121344279 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.561        
cufflinks 2.722        
cufflinks 0.889       Low
cufflinks 2.923        
cufflinks 0.721       Low
cufflinks 3.589       High

0 Strain