Gene : AT3G53960 A. thaliana TAIR10
Defline:  (1 of 3) PTHR11654:SF79 - PROTEIN NRT1/ PTR FAMILY 5.5-RELATED Genomic Order:  4434
Name:  ? AT3G53960 Secondary Identifier:  ? PAC:19659576
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53960 0.5kb upstream 0.5kb upstream 3338 true Chr3: 19978122-19981459 Arabidopsis thaliana
AT3G53960 0.5kb upstream 0.5kb upstream 500 false Chr3: 19980960-19981459 Arabidopsis thaliana
AT3G53960 0.5kb downstream 0.5kb downstream 3338 true Chr3: 19977622-19980959 Arabidopsis thaliana
AT3G53960 0.5kb downstream 0.5kb downstream 500 false Chr3: 19977622-19978121 Arabidopsis thaliana
AT3G53960 1.0kb upstream 1.0kb upstream 3838 true Chr3: 19978122-19981959 Arabidopsis thaliana
AT3G53960 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19980960-19981959 Arabidopsis thaliana
AT3G53960 1.0kb downstream 1.0kb downstream 3838 true Chr3: 19977122-19980959 Arabidopsis thaliana
AT3G53960 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19977122-19978121 Arabidopsis thaliana
AT3G53960 2.0kb upstream 2.0kb upstream 4838 true Chr3: 19978122-19982959 Arabidopsis thaliana
AT3G53960 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19980960-19982959 Arabidopsis thaliana
AT3G53960 2.0kb downstream 2.0kb downstream 4838 true Chr3: 19976122-19980959 Arabidopsis thaliana
AT3G53960 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19976122-19978121 Arabidopsis thaliana
AT3G53960 5.0kb upstream 5.0kb upstream 7838 true Chr3: 19978122-19985959 Arabidopsis thaliana
AT3G53960 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19980960-19985959 Arabidopsis thaliana
AT3G53960 5.0kb downstream 5.0kb downstream 7838 true Chr3: 19973122-19980959 Arabidopsis thaliana
AT3G53960 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19973122-19978121 Arabidopsis thaliana
AT3G53960 10.0kb upstream 10.0kb upstream 12838 true Chr3: 19978122-19990959 Arabidopsis thaliana
AT3G53960 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19980960-19990959 Arabidopsis thaliana
AT3G53960 10.0kb downstream 10.0kb downstream 12838 true Chr3: 19968122-19980959 Arabidopsis thaliana
AT3G53960 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19968122-19978121 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363497 5261 Brassicaceae View MSA
123835784 5264 Brassicales-Malvales View MSA
124345735 5266 SBM View MSA
124250834 5268 Malvidae View MSA
124072261 5270 Rosid View MSA
123752034 5271 Pentapetalae View MSA
122791264 5272 Eudicot View MSA
122045337 5273 Angiosperm View MSA
121350655 5274 Embryophyte View MSA
123428779 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.924       Low
cufflinks 62.356     High High
cufflinks 14.961        
cufflinks 69.737     High High
cufflinks 13.729        
cufflinks 36.444     High  

0 Strain