Gene : AT3G53820 A. thaliana TAIR10
Defline:  (1 of 4) PTHR26374//PTHR26374:SF192 - FAMILY NOT NAMED // C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN-RELATED Genomic Order:  4420
Name:  ? AT3G53820 Secondary Identifier:  ? PAC:19660609
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53820 0.5kb upstream 0.5kb upstream 929 true Chr3: 19938206-19939134 Arabidopsis thaliana
AT3G53820 0.5kb upstream 0.5kb upstream 500 false Chr3: 19938206-19938705 Arabidopsis thaliana
AT3G53820 0.5kb downstream 0.5kb downstream 929 true Chr3: 19938706-19939634 Arabidopsis thaliana
AT3G53820 0.5kb downstream 0.5kb downstream 500 false Chr3: 19939135-19939634 Arabidopsis thaliana
AT3G53820 1.0kb upstream 1.0kb upstream 1429 true Chr3: 19937706-19939134 Arabidopsis thaliana
AT3G53820 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19937706-19938705 Arabidopsis thaliana
AT3G53820 1.0kb downstream 1.0kb downstream 1429 true Chr3: 19938706-19940134 Arabidopsis thaliana
AT3G53820 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19939135-19940134 Arabidopsis thaliana
AT3G53820 2.0kb upstream 2.0kb upstream 2429 true Chr3: 19936706-19939134 Arabidopsis thaliana
AT3G53820 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19936706-19938705 Arabidopsis thaliana
AT3G53820 2.0kb downstream 2.0kb downstream 2429 true Chr3: 19938706-19941134 Arabidopsis thaliana
AT3G53820 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19939135-19941134 Arabidopsis thaliana
AT3G53820 5.0kb upstream 5.0kb upstream 5429 true Chr3: 19933706-19939134 Arabidopsis thaliana
AT3G53820 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19933706-19938705 Arabidopsis thaliana
AT3G53820 5.0kb downstream 5.0kb downstream 5429 true Chr3: 19938706-19944134 Arabidopsis thaliana
AT3G53820 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19939135-19944134 Arabidopsis thaliana
AT3G53820 10.0kb upstream 10.0kb upstream 10429 true Chr3: 19928706-19939134 Arabidopsis thaliana
AT3G53820 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19928706-19938705 Arabidopsis thaliana
AT3G53820 10.0kb downstream 10.0kb downstream 10429 true Chr3: 19938706-19949134 Arabidopsis thaliana
AT3G53820 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19939135-19949134 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378709 5261 Brassicaceae View MSA
123837008 5264 Brassicales-Malvales View MSA
124350002 5266 SBM View MSA
124246510 5268 Malvidae View MSA
124070631 5270 Rosid View MSA
123743825 5271 Pentapetalae View MSA
122795650 5272 Eudicot View MSA
122049526 5273 Angiosperm View MSA
121348741 5274 Embryophyte View MSA
123380998 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.281     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.879       High
cufflinks 0.037     Low Low
cufflinks 0.22     Low  

0 Strain