Gene : UPP A. thaliana TAIR10
Primary Identifier:  ? AT3G53900 Defline:  (1 of 1) K00761 - uracil phosphoribosyltransferase (upp, UPRT)
Genomic Order:  4428 Name:  ? AT3G53900
Secondary Identifier:  ? PAC:19658825
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7183 Arabidopsis thaliana pathologic  
Athaliana PWY-7196 Arabidopsis thaliana pathologic  
Athaliana PWY-7208 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53900 0.5kb upstream 0.5kb upstream 2886 true Chr3: 19956656-19959541 Arabidopsis thaliana
AT3G53900 0.5kb upstream 0.5kb upstream 500 false Chr3: 19959042-19959541 Arabidopsis thaliana
AT3G53900 0.5kb downstream 0.5kb downstream 2886 true Chr3: 19956156-19959041 Arabidopsis thaliana
AT3G53900 0.5kb downstream 0.5kb downstream 500 false Chr3: 19956156-19956655 Arabidopsis thaliana
AT3G53900 1.0kb upstream 1.0kb upstream 3386 true Chr3: 19956656-19960041 Arabidopsis thaliana
AT3G53900 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19959042-19960041 Arabidopsis thaliana
AT3G53900 1.0kb downstream 1.0kb downstream 3386 true Chr3: 19955656-19959041 Arabidopsis thaliana
AT3G53900 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19955656-19956655 Arabidopsis thaliana
AT3G53900 2.0kb upstream 2.0kb upstream 4386 true Chr3: 19956656-19961041 Arabidopsis thaliana
AT3G53900 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19959042-19961041 Arabidopsis thaliana
AT3G53900 2.0kb downstream 2.0kb downstream 4386 true Chr3: 19954656-19959041 Arabidopsis thaliana
AT3G53900 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19954656-19956655 Arabidopsis thaliana
AT3G53900 5.0kb upstream 5.0kb upstream 7386 true Chr3: 19956656-19964041 Arabidopsis thaliana
AT3G53900 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19959042-19964041 Arabidopsis thaliana
AT3G53900 5.0kb downstream 5.0kb downstream 7386 true Chr3: 19951656-19959041 Arabidopsis thaliana
AT3G53900 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19951656-19956655 Arabidopsis thaliana
AT3G53900 10.0kb upstream 10.0kb upstream 12386 true Chr3: 19956656-19969041 Arabidopsis thaliana
AT3G53900 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19959042-19969041 Arabidopsis thaliana
AT3G53900 10.0kb downstream 10.0kb downstream 12386 true Chr3: 19946656-19959041 Arabidopsis thaliana
AT3G53900 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19946656-19956655 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374588 5261 Brassicaceae View MSA
123841692 5264 Brassicales-Malvales View MSA
124343973 5266 SBM View MSA
124246802 5268 Malvidae View MSA
124068502 5270 Rosid View MSA
123740781 5271 Pentapetalae View MSA
122786054 5272 Eudicot View MSA
122047935 5273 Angiosperm View MSA
121345361 5274 Embryophyte View MSA
123424478 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.345        
cufflinks 1.645       Low
cufflinks 4.915       High
cufflinks 1.709        
cufflinks 3.211        
cufflinks 2.183        

0 Strain