Gene : AT3G53680 A. thaliana TAIR10
Defline:  (1 of 2) PTHR24098//PTHR24098:SF12 - FAMILY NOT NAMED // ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN Genomic Order:  4406
Name:  ? AT3G53680 Secondary Identifier:  ? PAC:19660931
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53680 0.5kb upstream 0.5kb upstream 5050 true Chr3: 19892863-19897912 Arabidopsis thaliana
AT3G53680 0.5kb upstream 0.5kb upstream 500 false Chr3: 19897413-19897912 Arabidopsis thaliana
AT3G53680 0.5kb downstream 0.5kb downstream 5050 true Chr3: 19892363-19897412 Arabidopsis thaliana
AT3G53680 0.5kb downstream 0.5kb downstream 500 false Chr3: 19892363-19892862 Arabidopsis thaliana
AT3G53680 1.0kb upstream 1.0kb upstream 5550 true Chr3: 19892863-19898412 Arabidopsis thaliana
AT3G53680 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19897413-19898412 Arabidopsis thaliana
AT3G53680 1.0kb downstream 1.0kb downstream 5550 true Chr3: 19891863-19897412 Arabidopsis thaliana
AT3G53680 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19891863-19892862 Arabidopsis thaliana
AT3G53680 2.0kb upstream 2.0kb upstream 6550 true Chr3: 19892863-19899412 Arabidopsis thaliana
AT3G53680 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19897413-19899412 Arabidopsis thaliana
AT3G53680 2.0kb downstream 2.0kb downstream 6550 true Chr3: 19890863-19897412 Arabidopsis thaliana
AT3G53680 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19890863-19892862 Arabidopsis thaliana
AT3G53680 5.0kb upstream 5.0kb upstream 9550 true Chr3: 19892863-19902412 Arabidopsis thaliana
AT3G53680 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19897413-19902412 Arabidopsis thaliana
AT3G53680 5.0kb downstream 5.0kb downstream 9550 true Chr3: 19887863-19897412 Arabidopsis thaliana
AT3G53680 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19887863-19892862 Arabidopsis thaliana
AT3G53680 10.0kb upstream 10.0kb upstream 14550 true Chr3: 19892863-19907412 Arabidopsis thaliana
AT3G53680 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19897413-19907412 Arabidopsis thaliana
AT3G53680 10.0kb downstream 10.0kb downstream 14550 true Chr3: 19882863-19897412 Arabidopsis thaliana
AT3G53680 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19882863-19892862 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377305 5261 Brassicaceae View MSA
123801497 5264 Brassicales-Malvales View MSA
124298794 5266 SBM View MSA
124243929 5268 Malvidae View MSA
124067394 5270 Rosid View MSA
123737655 5271 Pentapetalae View MSA
122795186 5272 Eudicot View MSA
122050898 5273 Angiosperm View MSA
121351041 5274 Embryophyte View MSA
123425735 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.418        
cufflinks 1.996        
cufflinks 1.262        
cufflinks 2.01        
cufflinks 1.006       Low
cufflinks 1.784        

0 Strain