Gene : AT3G53690 A. thaliana TAIR10
Defline:  (1 of 2) K11975 - E3 ubiquitin-protein ligase RNF144 [EC:6.3.2.19] (RNF144) Genomic Order:  4407
Name:  ? AT3G53690 Secondary Identifier:  ? PAC:19658967
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53690 0.5kb upstream 0.5kb upstream 1778 true Chr3: 19898788-19900565 Arabidopsis thaliana
AT3G53690 0.5kb upstream 0.5kb upstream 500 false Chr3: 19900066-19900565 Arabidopsis thaliana
AT3G53690 0.5kb downstream 0.5kb downstream 1778 true Chr3: 19898288-19900065 Arabidopsis thaliana
AT3G53690 0.5kb downstream 0.5kb downstream 500 false Chr3: 19898288-19898787 Arabidopsis thaliana
AT3G53690 1.0kb upstream 1.0kb upstream 2278 true Chr3: 19898788-19901065 Arabidopsis thaliana
AT3G53690 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19900066-19901065 Arabidopsis thaliana
AT3G53690 1.0kb downstream 1.0kb downstream 2278 true Chr3: 19897788-19900065 Arabidopsis thaliana
AT3G53690 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19897788-19898787 Arabidopsis thaliana
AT3G53690 2.0kb upstream 2.0kb upstream 3278 true Chr3: 19898788-19902065 Arabidopsis thaliana
AT3G53690 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19900066-19902065 Arabidopsis thaliana
AT3G53690 2.0kb downstream 2.0kb downstream 3278 true Chr3: 19896788-19900065 Arabidopsis thaliana
AT3G53690 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19896788-19898787 Arabidopsis thaliana
AT3G53690 5.0kb upstream 5.0kb upstream 6278 true Chr3: 19898788-19905065 Arabidopsis thaliana
AT3G53690 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19900066-19905065 Arabidopsis thaliana
AT3G53690 5.0kb downstream 5.0kb downstream 6278 true Chr3: 19893788-19900065 Arabidopsis thaliana
AT3G53690 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19893788-19898787 Arabidopsis thaliana
AT3G53690 10.0kb upstream 10.0kb upstream 11278 true Chr3: 19898788-19910065 Arabidopsis thaliana
AT3G53690 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19900066-19910065 Arabidopsis thaliana
AT3G53690 10.0kb downstream 10.0kb downstream 11278 true Chr3: 19888788-19900065 Arabidopsis thaliana
AT3G53690 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19888788-19898787 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373369 5261 Brassicaceae View MSA
123837883 5264 Brassicales-Malvales View MSA
124349689 5266 SBM View MSA
124252111 5268 Malvidae View MSA
124068077 5270 Rosid View MSA
123752192 5271 Pentapetalae View MSA
122796967 5272 Eudicot View MSA
122046828 5273 Angiosperm View MSA
123429065 5275 Viridiplantae View MSA
121348618 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.219        
cufflinks 1.806        
cufflinks 0.813       Low
cufflinks 1.91       High
cufflinks 1.297        
cufflinks 1.412        

0 Strain