Gene : ACT3 A. thaliana TAIR10
Primary Identifier:  ? AT3G53750 Defline:  (1 of 2) PTHR11937//PTHR11937:SF236 - ACTIN // ACTIN-1-RELATED
Genomic Order:  4413 Name:  ? AT3G53750
Secondary Identifier:  ? PAC:19660082
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53750 0.5kb upstream 0.5kb upstream 2854 true Chr3: 19914788-19917641 Arabidopsis thaliana
AT3G53750 0.5kb upstream 0.5kb upstream 500 false Chr3: 19914788-19915287 Arabidopsis thaliana
AT3G53750 0.5kb downstream 0.5kb downstream 2854 true Chr3: 19915288-19918141 Arabidopsis thaliana
AT3G53750 0.5kb downstream 0.5kb downstream 500 false Chr3: 19917642-19918141 Arabidopsis thaliana
AT3G53750 1.0kb upstream 1.0kb upstream 3354 true Chr3: 19914288-19917641 Arabidopsis thaliana
AT3G53750 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19914288-19915287 Arabidopsis thaliana
AT3G53750 1.0kb downstream 1.0kb downstream 3354 true Chr3: 19915288-19918641 Arabidopsis thaliana
AT3G53750 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19917642-19918641 Arabidopsis thaliana
AT3G53750 2.0kb upstream 2.0kb upstream 4354 true Chr3: 19913288-19917641 Arabidopsis thaliana
AT3G53750 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19913288-19915287 Arabidopsis thaliana
AT3G53750 2.0kb downstream 2.0kb downstream 4354 true Chr3: 19915288-19919641 Arabidopsis thaliana
AT3G53750 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19917642-19919641 Arabidopsis thaliana
AT3G53750 5.0kb upstream 5.0kb upstream 7354 true Chr3: 19910288-19917641 Arabidopsis thaliana
AT3G53750 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19910288-19915287 Arabidopsis thaliana
AT3G53750 5.0kb downstream 5.0kb downstream 7354 true Chr3: 19915288-19922641 Arabidopsis thaliana
AT3G53750 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19917642-19922641 Arabidopsis thaliana
AT3G53750 10.0kb upstream 10.0kb upstream 12354 true Chr3: 19905288-19917641 Arabidopsis thaliana
AT3G53750 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19905288-19915287 Arabidopsis thaliana
AT3G53750 10.0kb downstream 10.0kb downstream 12354 true Chr3: 19915288-19927641 Arabidopsis thaliana
AT3G53750 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19917642-19927641 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376129 5261 Brassicaceae View MSA
123836998 5264 Brassicales-Malvales View MSA
124351285 5266 SBM View MSA
124247835 5268 Malvidae View MSA
124074063 5270 Rosid View MSA
123752253 5271 Pentapetalae View MSA
122794505 5272 Eudicot View MSA
122049993 5273 Angiosperm View MSA
123429016 5275 Viridiplantae View MSA
121350794 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.163        
cufflinks 17.311        
cufflinks 9.39        
cufflinks 16.773        
cufflinks 6.857       Low
cufflinks 24.986       High

0 Strain