Gene : MEE40 A. thaliana TAIR10
Primary Identifier:  ? AT3G53700 Defline:  (1 of 10) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3)
Genomic Order:  4408 Name:  ? AT3G53700
Secondary Identifier:  ? PAC:19660034
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53700 0.5kb upstream 0.5kb upstream 3105 true Chr3: 19899780-19902884 Arabidopsis thaliana
AT3G53700 0.5kb upstream 0.5kb upstream 500 false Chr3: 19899780-19900279 Arabidopsis thaliana
AT3G53700 0.5kb downstream 0.5kb downstream 3105 true Chr3: 19900280-19903384 Arabidopsis thaliana
AT3G53700 0.5kb downstream 0.5kb downstream 500 false Chr3: 19902885-19903384 Arabidopsis thaliana
AT3G53700 1.0kb upstream 1.0kb upstream 3605 true Chr3: 19899280-19902884 Arabidopsis thaliana
AT3G53700 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19899280-19900279 Arabidopsis thaliana
AT3G53700 1.0kb downstream 1.0kb downstream 3605 true Chr3: 19900280-19903884 Arabidopsis thaliana
AT3G53700 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19902885-19903884 Arabidopsis thaliana
AT3G53700 2.0kb upstream 2.0kb upstream 4605 true Chr3: 19898280-19902884 Arabidopsis thaliana
AT3G53700 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19898280-19900279 Arabidopsis thaliana
AT3G53700 2.0kb downstream 2.0kb downstream 4605 true Chr3: 19900280-19904884 Arabidopsis thaliana
AT3G53700 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19902885-19904884 Arabidopsis thaliana
AT3G53700 5.0kb upstream 5.0kb upstream 7605 true Chr3: 19895280-19902884 Arabidopsis thaliana
AT3G53700 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19895280-19900279 Arabidopsis thaliana
AT3G53700 5.0kb downstream 5.0kb downstream 7605 true Chr3: 19900280-19907884 Arabidopsis thaliana
AT3G53700 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19902885-19907884 Arabidopsis thaliana
AT3G53700 10.0kb upstream 10.0kb upstream 12605 true Chr3: 19890280-19902884 Arabidopsis thaliana
AT3G53700 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19890280-19900279 Arabidopsis thaliana
AT3G53700 10.0kb downstream 10.0kb downstream 12605 true Chr3: 19900280-19912884 Arabidopsis thaliana
AT3G53700 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19902885-19912884 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370118 5261 Brassicaceae View MSA
123830394 5264 Brassicales-Malvales View MSA
124343968 5266 SBM View MSA
124241547 5268 Malvidae View MSA
124068324 5270 Rosid View MSA
123737648 5271 Pentapetalae View MSA
122793672 5272 Eudicot View MSA
122045784 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.342       High
cufflinks 4.259        
cufflinks 10.571       High
cufflinks 3.916        
cufflinks 7.604        
cufflinks 3.941        

0 Strain