Gene : AT3G53600 A. thaliana TAIR10
Defline:  (1 of 2) PTHR26374//PTHR26374:SF198 - FAMILY NOT NAMED // ZINC FINGER PROTEIN ZAT11 Genomic Order:  4397
Name:  ? AT3G53600 Secondary Identifier:  ? PAC:19662970
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53600 0.5kb upstream 0.5kb upstream 1028 true Chr3: 19875032-19876059 Arabidopsis thaliana
AT3G53600 0.5kb upstream 0.5kb upstream 500 false Chr3: 19875032-19875531 Arabidopsis thaliana
AT3G53600 0.5kb downstream 0.5kb downstream 1028 true Chr3: 19875532-19876559 Arabidopsis thaliana
AT3G53600 0.5kb downstream 0.5kb downstream 500 false Chr3: 19876060-19876559 Arabidopsis thaliana
AT3G53600 1.0kb upstream 1.0kb upstream 1528 true Chr3: 19874532-19876059 Arabidopsis thaliana
AT3G53600 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19874532-19875531 Arabidopsis thaliana
AT3G53600 1.0kb downstream 1.0kb downstream 1528 true Chr3: 19875532-19877059 Arabidopsis thaliana
AT3G53600 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19876060-19877059 Arabidopsis thaliana
AT3G53600 2.0kb upstream 2.0kb upstream 2528 true Chr3: 19873532-19876059 Arabidopsis thaliana
AT3G53600 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19873532-19875531 Arabidopsis thaliana
AT3G53600 2.0kb downstream 2.0kb downstream 2528 true Chr3: 19875532-19878059 Arabidopsis thaliana
AT3G53600 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19876060-19878059 Arabidopsis thaliana
AT3G53600 5.0kb upstream 5.0kb upstream 5528 true Chr3: 19870532-19876059 Arabidopsis thaliana
AT3G53600 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19870532-19875531 Arabidopsis thaliana
AT3G53600 5.0kb downstream 5.0kb downstream 5528 true Chr3: 19875532-19881059 Arabidopsis thaliana
AT3G53600 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19876060-19881059 Arabidopsis thaliana
AT3G53600 10.0kb upstream 10.0kb upstream 10528 true Chr3: 19865532-19876059 Arabidopsis thaliana
AT3G53600 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19865532-19875531 Arabidopsis thaliana
AT3G53600 10.0kb downstream 10.0kb downstream 10528 true Chr3: 19875532-19886059 Arabidopsis thaliana
AT3G53600 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19876060-19886059 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360511 5261 Brassicaceae View MSA
123797967 5264 Brassicales-Malvales View MSA
124295660 5266 SBM View MSA
124148036 5268 Malvidae View MSA
124071249 5270 Rosid View MSA
123747694 5271 Pentapetalae View MSA
122796352 5272 Eudicot View MSA
122051585 5273 Angiosperm View MSA
121348252 5274 Embryophyte View MSA
123380791 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.941        
cufflinks 2.621        
cufflinks 1.829        
cufflinks 3.754        
cufflinks 0.677       Low
cufflinks 7.552       High

0 Strain