Gene : CP29 A. thaliana TAIR10
Primary Identifier:  ? AT3G53460 Defline:  (1 of 1) KOG0131//KOG0144 - Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
Genomic Order:  4383 Name:  ? AT3G53460
Secondary Identifier:  ? PAC:19665065
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53460 0.5kb upstream 0.5kb upstream 2835 true Chr3: 19819185-19822019 Arabidopsis thaliana
AT3G53460 0.5kb upstream 0.5kb upstream 500 false Chr3: 19821520-19822019 Arabidopsis thaliana
AT3G53460 0.5kb downstream 0.5kb downstream 2835 true Chr3: 19818685-19821519 Arabidopsis thaliana
AT3G53460 0.5kb downstream 0.5kb downstream 500 false Chr3: 19818685-19819184 Arabidopsis thaliana
AT3G53460 1.0kb upstream 1.0kb upstream 3335 true Chr3: 19819185-19822519 Arabidopsis thaliana
AT3G53460 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19821520-19822519 Arabidopsis thaliana
AT3G53460 1.0kb downstream 1.0kb downstream 3335 true Chr3: 19818185-19821519 Arabidopsis thaliana
AT3G53460 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19818185-19819184 Arabidopsis thaliana
AT3G53460 2.0kb upstream 2.0kb upstream 4335 true Chr3: 19819185-19823519 Arabidopsis thaliana
AT3G53460 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19821520-19823519 Arabidopsis thaliana
AT3G53460 2.0kb downstream 2.0kb downstream 4335 true Chr3: 19817185-19821519 Arabidopsis thaliana
AT3G53460 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19817185-19819184 Arabidopsis thaliana
AT3G53460 5.0kb upstream 5.0kb upstream 7335 true Chr3: 19819185-19826519 Arabidopsis thaliana
AT3G53460 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19821520-19826519 Arabidopsis thaliana
AT3G53460 5.0kb downstream 5.0kb downstream 7335 true Chr3: 19814185-19821519 Arabidopsis thaliana
AT3G53460 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19814185-19819184 Arabidopsis thaliana
AT3G53460 10.0kb upstream 10.0kb upstream 12335 true Chr3: 19819185-19831519 Arabidopsis thaliana
AT3G53460 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19821520-19831519 Arabidopsis thaliana
AT3G53460 10.0kb downstream 10.0kb downstream 12335 true Chr3: 19809185-19821519 Arabidopsis thaliana
AT3G53460 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19809185-19819184 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040882 5273 Angiosperm View MSA
122366081 5261 Brassicaceae View MSA
123799104 5264 Brassicales-Malvales View MSA
124296656 5266 SBM View MSA
124148746 5268 Malvidae View MSA
123874684 5270 Rosid View MSA
123739756 5271 Pentapetalae View MSA
122769963 5272 Eudicot View MSA
123429142 5275 Viridiplantae View MSA
121349812 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 96.595     High  
cufflinks 8.438        
cufflinks 116.203     High High
cufflinks 9.374        
cufflinks 94.926     High  
cufflinks 6.792       Low

0 Strain