Gene : AT3G53560 A. thaliana TAIR10
Defline:  (1 of 4) PTHR26312//PTHR26312:SF76 - FAMILY NOT NAMED // TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN Genomic Order:  4393
Name:  ? AT3G53560 Secondary Identifier:  ? PAC:19664889
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7437 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53560 0.5kb upstream 0.5kb upstream 1905 true Chr3: 19859627-19861531 Arabidopsis thaliana
AT3G53560 0.5kb upstream 0.5kb upstream 500 false Chr3: 19861032-19861531 Arabidopsis thaliana
AT3G53560 0.5kb downstream 0.5kb downstream 1905 true Chr3: 19859127-19861031 Arabidopsis thaliana
AT3G53560 0.5kb downstream 0.5kb downstream 500 false Chr3: 19859127-19859626 Arabidopsis thaliana
AT3G53560 1.0kb upstream 1.0kb upstream 2405 true Chr3: 19859627-19862031 Arabidopsis thaliana
AT3G53560 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19861032-19862031 Arabidopsis thaliana
AT3G53560 1.0kb downstream 1.0kb downstream 2405 true Chr3: 19858627-19861031 Arabidopsis thaliana
AT3G53560 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19858627-19859626 Arabidopsis thaliana
AT3G53560 2.0kb upstream 2.0kb upstream 3405 true Chr3: 19859627-19863031 Arabidopsis thaliana
AT3G53560 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19861032-19863031 Arabidopsis thaliana
AT3G53560 2.0kb downstream 2.0kb downstream 3405 true Chr3: 19857627-19861031 Arabidopsis thaliana
AT3G53560 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19857627-19859626 Arabidopsis thaliana
AT3G53560 5.0kb upstream 5.0kb upstream 6405 true Chr3: 19859627-19866031 Arabidopsis thaliana
AT3G53560 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19861032-19866031 Arabidopsis thaliana
AT3G53560 5.0kb downstream 5.0kb downstream 6405 true Chr3: 19854627-19861031 Arabidopsis thaliana
AT3G53560 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19854627-19859626 Arabidopsis thaliana
AT3G53560 10.0kb upstream 10.0kb upstream 11405 true Chr3: 19859627-19871031 Arabidopsis thaliana
AT3G53560 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19861032-19871031 Arabidopsis thaliana
AT3G53560 10.0kb downstream 10.0kb downstream 11405 true Chr3: 19849627-19861031 Arabidopsis thaliana
AT3G53560 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19849627-19859626 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370983 5261 Brassicaceae View MSA
123840752 5264 Brassicales-Malvales View MSA
124338803 5266 SBM View MSA
124237294 5268 Malvidae View MSA
124062008 5270 Rosid View MSA
123737830 5271 Pentapetalae View MSA
122791127 5272 Eudicot View MSA
122050724 5273 Angiosperm View MSA
121348352 5274 Embryophyte View MSA
123426406 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.818     High  
cufflinks 9.169        
cufflinks 54.905     High High
cufflinks 9.631        
cufflinks 41.065     High  
cufflinks 8.726        

0 Strain