Gene : AT3G53370 A. thaliana TAIR10
Defline:  (1 of 3) PF04689 - DNA binding protein S1FA (S1FA) Genomic Order:  4373
Name:  ? AT3G53370 Secondary Identifier:  ? PAC:19665160
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53370 0.5kb upstream 0.5kb upstream 1450 true Chr3: 19787894-19789343 Arabidopsis thaliana
AT3G53370 0.5kb upstream 0.5kb upstream 500 false Chr3: 19788844-19789343 Arabidopsis thaliana
AT3G53370 0.5kb downstream 0.5kb downstream 1450 true Chr3: 19787394-19788843 Arabidopsis thaliana
AT3G53370 0.5kb downstream 0.5kb downstream 500 false Chr3: 19787394-19787893 Arabidopsis thaliana
AT3G53370 1.0kb upstream 1.0kb upstream 1950 true Chr3: 19787894-19789843 Arabidopsis thaliana
AT3G53370 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19788844-19789843 Arabidopsis thaliana
AT3G53370 1.0kb downstream 1.0kb downstream 1950 true Chr3: 19786894-19788843 Arabidopsis thaliana
AT3G53370 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19786894-19787893 Arabidopsis thaliana
AT3G53370 2.0kb upstream 2.0kb upstream 2950 true Chr3: 19787894-19790843 Arabidopsis thaliana
AT3G53370 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19788844-19790843 Arabidopsis thaliana
AT3G53370 2.0kb downstream 2.0kb downstream 2950 true Chr3: 19785894-19788843 Arabidopsis thaliana
AT3G53370 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19785894-19787893 Arabidopsis thaliana
AT3G53370 5.0kb upstream 5.0kb upstream 5950 true Chr3: 19787894-19793843 Arabidopsis thaliana
AT3G53370 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19788844-19793843 Arabidopsis thaliana
AT3G53370 5.0kb downstream 5.0kb downstream 5950 true Chr3: 19782894-19788843 Arabidopsis thaliana
AT3G53370 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19782894-19787893 Arabidopsis thaliana
AT3G53370 10.0kb upstream 10.0kb upstream 10950 true Chr3: 19787894-19798843 Arabidopsis thaliana
AT3G53370 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19788844-19798843 Arabidopsis thaliana
AT3G53370 10.0kb downstream 10.0kb downstream 10950 true Chr3: 19777894-19788843 Arabidopsis thaliana
AT3G53370 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19777894-19787893 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367637 5261 Brassicaceae View MSA
123835903 5264 Brassicales-Malvales View MSA
124349743 5266 SBM View MSA
124251258 5268 Malvidae View MSA
124072981 5270 Rosid View MSA
123737757 5271 Pentapetalae View MSA
122787039 5272 Eudicot View MSA
122043521 5273 Angiosperm View MSA
121348101 5274 Embryophyte View MSA
123427366 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.122        
cufflinks 1.593        
cufflinks 1.415       Low
cufflinks 2.534       High
cufflinks 1.71        
cufflinks 2.147        

0 Strain