Gene : PIP2A A. thaliana TAIR10
Primary Identifier:  ? AT3G53420 Defline:  (1 of 3) PTHR19139//PTHR19139:SF167 - AQUAPORIN TRANSPORTER // AQUAPORIN PIP2-1-RELATED
Genomic Order:  4379 Name:  ? AT3G53420
Secondary Identifier:  ? PAC:19658395
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53420 0.5kb upstream 0.5kb upstream 2559 true Chr3: 19803655-19806213 Arabidopsis thaliana
AT3G53420 0.5kb upstream 0.5kb upstream 500 false Chr3: 19805714-19806213 Arabidopsis thaliana
AT3G53420 0.5kb downstream 0.5kb downstream 2559 true Chr3: 19803155-19805713 Arabidopsis thaliana
AT3G53420 0.5kb downstream 0.5kb downstream 500 false Chr3: 19803155-19803654 Arabidopsis thaliana
AT3G53420 1.0kb upstream 1.0kb upstream 3059 true Chr3: 19803655-19806713 Arabidopsis thaliana
AT3G53420 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19805714-19806713 Arabidopsis thaliana
AT3G53420 1.0kb downstream 1.0kb downstream 3059 true Chr3: 19802655-19805713 Arabidopsis thaliana
AT3G53420 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19802655-19803654 Arabidopsis thaliana
AT3G53420 2.0kb upstream 2.0kb upstream 4059 true Chr3: 19803655-19807713 Arabidopsis thaliana
AT3G53420 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19805714-19807713 Arabidopsis thaliana
AT3G53420 2.0kb downstream 2.0kb downstream 4059 true Chr3: 19801655-19805713 Arabidopsis thaliana
AT3G53420 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19801655-19803654 Arabidopsis thaliana
AT3G53420 5.0kb upstream 5.0kb upstream 7059 true Chr3: 19803655-19810713 Arabidopsis thaliana
AT3G53420 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19805714-19810713 Arabidopsis thaliana
AT3G53420 5.0kb downstream 5.0kb downstream 7059 true Chr3: 19798655-19805713 Arabidopsis thaliana
AT3G53420 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19798655-19803654 Arabidopsis thaliana
AT3G53420 10.0kb upstream 10.0kb upstream 12059 true Chr3: 19803655-19815713 Arabidopsis thaliana
AT3G53420 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19805714-19815713 Arabidopsis thaliana
AT3G53420 10.0kb downstream 10.0kb downstream 12059 true Chr3: 19793655-19805713 Arabidopsis thaliana
AT3G53420 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19793655-19803654 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366398 5261 Brassicaceae View MSA
123841120 5264 Brassicales-Malvales View MSA
124348415 5266 SBM View MSA
124250683 5268 Malvidae View MSA
124072512 5270 Rosid View MSA
123751650 5271 Pentapetalae View MSA
122791496 5272 Eudicot View MSA
122046313 5273 Angiosperm View MSA
121349621 5274 Embryophyte View MSA
123428679 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 83.75     High  
cufflinks 48.646     High Low
cufflinks 82.988     High  
cufflinks 59.018     High  
cufflinks 85.35     High  
cufflinks 63.624     High  

0 Strain