Gene : PAL2 A. thaliana TAIR10
Primary Identifier:  ? AT3G53260 Defline:  (1 of 4) 4.3.1.24 - Phenylalanine ammonia-lyase
Genomic Order:  4359 Name:  ? AT3G53260
Secondary Identifier:  ? PAC:19663780
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1121 Arabidopsis thaliana pathologic  
Athaliana PWY1F-467 Arabidopsis thaliana pathologic  
Athaliana PWY-7186 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53260 0.5kb upstream 0.5kb upstream 3230 true Chr3: 19744051-19747280 Arabidopsis thaliana
AT3G53260 0.5kb upstream 0.5kb upstream 500 false Chr3: 19746781-19747280 Arabidopsis thaliana
AT3G53260 0.5kb downstream 0.5kb downstream 3230 true Chr3: 19743551-19746780 Arabidopsis thaliana
AT3G53260 0.5kb downstream 0.5kb downstream 500 false Chr3: 19743551-19744050 Arabidopsis thaliana
AT3G53260 1.0kb upstream 1.0kb upstream 3730 true Chr3: 19744051-19747780 Arabidopsis thaliana
AT3G53260 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19746781-19747780 Arabidopsis thaliana
AT3G53260 1.0kb downstream 1.0kb downstream 3730 true Chr3: 19743051-19746780 Arabidopsis thaliana
AT3G53260 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19743051-19744050 Arabidopsis thaliana
AT3G53260 2.0kb upstream 2.0kb upstream 4730 true Chr3: 19744051-19748780 Arabidopsis thaliana
AT3G53260 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19746781-19748780 Arabidopsis thaliana
AT3G53260 2.0kb downstream 2.0kb downstream 4730 true Chr3: 19742051-19746780 Arabidopsis thaliana
AT3G53260 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19742051-19744050 Arabidopsis thaliana
AT3G53260 5.0kb upstream 5.0kb upstream 7730 true Chr3: 19744051-19751780 Arabidopsis thaliana
AT3G53260 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19746781-19751780 Arabidopsis thaliana
AT3G53260 5.0kb downstream 5.0kb downstream 7730 true Chr3: 19739051-19746780 Arabidopsis thaliana
AT3G53260 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19739051-19744050 Arabidopsis thaliana
AT3G53260 10.0kb upstream 10.0kb upstream 12730 true Chr3: 19744051-19756780 Arabidopsis thaliana
AT3G53260 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19746781-19756780 Arabidopsis thaliana
AT3G53260 10.0kb downstream 10.0kb downstream 12730 true Chr3: 19734051-19746780 Arabidopsis thaliana
AT3G53260 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19734051-19744050 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363433 5261 Brassicaceae View MSA
123839790 5264 Brassicales-Malvales View MSA
124346801 5266 SBM View MSA
124254509 5268 Malvidae View MSA
124070450 5270 Rosid View MSA
123747775 5271 Pentapetalae View MSA
122795347 5272 Eudicot View MSA
122043246 5273 Angiosperm View MSA
121351477 5274 Embryophyte View MSA
123382181 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.788       Low
cufflinks 99.738     High  
cufflinks 16.929        
cufflinks 132.072     High High
cufflinks 18.385        
cufflinks 114.87     High  

0 Strain