Gene : UPL7 A. thaliana TAIR10
Primary Identifier:  ? AT3G53090 Defline:  (1 of 1) K10588 - ubiquitin-protein ligase E3 B (UBE3B)
Genomic Order:  4340 Name:  ? AT3G53090
Secondary Identifier:  ? PAC:19660723
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53090 0.5kb upstream 0.5kb upstream 6653 true Chr3: 19678708-19685360 Arabidopsis thaliana
AT3G53090 0.5kb upstream 0.5kb upstream 500 false Chr3: 19678708-19679207 Arabidopsis thaliana
AT3G53090 0.5kb downstream 0.5kb downstream 6653 true Chr3: 19679208-19685860 Arabidopsis thaliana
AT3G53090 0.5kb downstream 0.5kb downstream 500 false Chr3: 19685361-19685860 Arabidopsis thaliana
AT3G53090 1.0kb upstream 1.0kb upstream 7153 true Chr3: 19678208-19685360 Arabidopsis thaliana
AT3G53090 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19678208-19679207 Arabidopsis thaliana
AT3G53090 1.0kb downstream 1.0kb downstream 7153 true Chr3: 19679208-19686360 Arabidopsis thaliana
AT3G53090 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19685361-19686360 Arabidopsis thaliana
AT3G53090 2.0kb upstream 2.0kb upstream 8153 true Chr3: 19677208-19685360 Arabidopsis thaliana
AT3G53090 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19677208-19679207 Arabidopsis thaliana
AT3G53090 2.0kb downstream 2.0kb downstream 8153 true Chr3: 19679208-19687360 Arabidopsis thaliana
AT3G53090 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19685361-19687360 Arabidopsis thaliana
AT3G53090 5.0kb upstream 5.0kb upstream 11153 true Chr3: 19674208-19685360 Arabidopsis thaliana
AT3G53090 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19674208-19679207 Arabidopsis thaliana
AT3G53090 5.0kb downstream 5.0kb downstream 11153 true Chr3: 19679208-19690360 Arabidopsis thaliana
AT3G53090 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19685361-19690360 Arabidopsis thaliana
AT3G53090 10.0kb upstream 10.0kb upstream 16153 true Chr3: 19669208-19685360 Arabidopsis thaliana
AT3G53090 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19669208-19679207 Arabidopsis thaliana
AT3G53090 10.0kb downstream 10.0kb downstream 16153 true Chr3: 19679208-19695360 Arabidopsis thaliana
AT3G53090 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19685361-19695360 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367039 5261 Brassicaceae View MSA
123827587 5264 Brassicales-Malvales View MSA
124346572 5266 SBM View MSA
124252639 5268 Malvidae View MSA
124065760 5270 Rosid View MSA
123737097 5271 Pentapetalae View MSA
122793139 5272 Eudicot View MSA
122047566 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121351552 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.326        
cufflinks 2.92       High
cufflinks 1.979       Low
cufflinks 2.921       High
cufflinks 2.245        
cufflinks 2.511        

0 Strain