Gene : AT3G52870 A. thaliana TAIR10
Defline:  IQ calmodulin-binding motif family protein Genomic Order:  4314
Name:  ? AT3G52870 Secondary Identifier:  ? PAC:19665131
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G52870 0.5kb upstream 0.5kb upstream 3150 true Chr3: 19593173-19596322 Arabidopsis thaliana
AT3G52870 0.5kb upstream 0.5kb upstream 500 false Chr3: 19595823-19596322 Arabidopsis thaliana
AT3G52870 0.5kb downstream 0.5kb downstream 3150 true Chr3: 19592673-19595822 Arabidopsis thaliana
AT3G52870 0.5kb downstream 0.5kb downstream 500 false Chr3: 19592673-19593172 Arabidopsis thaliana
AT3G52870 1.0kb upstream 1.0kb upstream 3650 true Chr3: 19593173-19596822 Arabidopsis thaliana
AT3G52870 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19595823-19596822 Arabidopsis thaliana
AT3G52870 1.0kb downstream 1.0kb downstream 3650 true Chr3: 19592173-19595822 Arabidopsis thaliana
AT3G52870 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19592173-19593172 Arabidopsis thaliana
AT3G52870 2.0kb upstream 2.0kb upstream 4650 true Chr3: 19593173-19597822 Arabidopsis thaliana
AT3G52870 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19595823-19597822 Arabidopsis thaliana
AT3G52870 2.0kb downstream 2.0kb downstream 4650 true Chr3: 19591173-19595822 Arabidopsis thaliana
AT3G52870 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19591173-19593172 Arabidopsis thaliana
AT3G52870 5.0kb upstream 5.0kb upstream 7650 true Chr3: 19593173-19600822 Arabidopsis thaliana
AT3G52870 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19595823-19600822 Arabidopsis thaliana
AT3G52870 5.0kb downstream 5.0kb downstream 7650 true Chr3: 19588173-19595822 Arabidopsis thaliana
AT3G52870 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19588173-19593172 Arabidopsis thaliana
AT3G52870 10.0kb upstream 10.0kb upstream 12650 true Chr3: 19593173-19605822 Arabidopsis thaliana
AT3G52870 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19595823-19605822 Arabidopsis thaliana
AT3G52870 10.0kb downstream 10.0kb downstream 12650 true Chr3: 19583173-19595822 Arabidopsis thaliana
AT3G52870 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19583173-19593172 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362517 5261 Brassicaceae View MSA
123831267 5264 Brassicales-Malvales View MSA
124344464 5266 SBM View MSA
124239438 5268 Malvidae View MSA
124074111 5270 Rosid View MSA
123736722 5271 Pentapetalae View MSA
122789560 5272 Eudicot View MSA
122050586 5273 Angiosperm View MSA
121351725 5274 Embryophyte View MSA
123382293 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.313       Low
cufflinks 31.101     High  
cufflinks 33.289     High  
cufflinks 37.771     High High
cufflinks 28.198     High  
cufflinks 25.661        

0 Strain