Gene : AT3G52900 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21470//PTHR21470:SF3 - NTKL-BINDING PROTEIN 1 // SUBFAMILY NOT NAMED Genomic Order:  4317
Name:  ? AT3G52900 Secondary Identifier:  ? PAC:19658962
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G52900 0.5kb upstream 0.5kb upstream 1410 true Chr3: 19612618-19614027 Arabidopsis thaliana
AT3G52900 0.5kb upstream 0.5kb upstream 500 false Chr3: 19612618-19613117 Arabidopsis thaliana
AT3G52900 0.5kb downstream 0.5kb downstream 1410 true Chr3: 19613118-19614527 Arabidopsis thaliana
AT3G52900 0.5kb downstream 0.5kb downstream 500 false Chr3: 19614028-19614527 Arabidopsis thaliana
AT3G52900 1.0kb upstream 1.0kb upstream 1910 true Chr3: 19612118-19614027 Arabidopsis thaliana
AT3G52900 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19612118-19613117 Arabidopsis thaliana
AT3G52900 1.0kb downstream 1.0kb downstream 1910 true Chr3: 19613118-19615027 Arabidopsis thaliana
AT3G52900 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19614028-19615027 Arabidopsis thaliana
AT3G52900 2.0kb upstream 2.0kb upstream 2910 true Chr3: 19611118-19614027 Arabidopsis thaliana
AT3G52900 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19611118-19613117 Arabidopsis thaliana
AT3G52900 2.0kb downstream 2.0kb downstream 2910 true Chr3: 19613118-19616027 Arabidopsis thaliana
AT3G52900 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19614028-19616027 Arabidopsis thaliana
AT3G52900 5.0kb upstream 5.0kb upstream 5910 true Chr3: 19608118-19614027 Arabidopsis thaliana
AT3G52900 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19608118-19613117 Arabidopsis thaliana
AT3G52900 5.0kb downstream 5.0kb downstream 5910 true Chr3: 19613118-19619027 Arabidopsis thaliana
AT3G52900 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19614028-19619027 Arabidopsis thaliana
AT3G52900 10.0kb upstream 10.0kb upstream 10910 true Chr3: 19603118-19614027 Arabidopsis thaliana
AT3G52900 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19603118-19613117 Arabidopsis thaliana
AT3G52900 10.0kb downstream 10.0kb downstream 10910 true Chr3: 19613118-19624027 Arabidopsis thaliana
AT3G52900 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19614028-19624027 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376001 5261 Brassicaceae View MSA
123801112 5264 Brassicales-Malvales View MSA
124298449 5266 SBM View MSA
124245895 5268 Malvidae View MSA
124073883 5270 Rosid View MSA
123746647 5271 Pentapetalae View MSA
122796434 5272 Eudicot View MSA
122043123 5273 Angiosperm View MSA
121348137 5274 Embryophyte View MSA
123380740 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.037        
cufflinks 30.965     High  
cufflinks 5.853        
cufflinks 30.001        
cufflinks 3.653       Low
cufflinks 40.006     High High

0 Strain