Gene : AT3G52580 A. thaliana TAIR10
Defline:  (1 of 3) K02955 - small subunit ribosomal protein S14e (RP-S14e, RPS14) Genomic Order:  4286
Name:  ? AT3G52580 Secondary Identifier:  ? PAC:19660654
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G52580 0.5kb upstream 0.5kb upstream 2251 true Chr3: 19502723-19504973 Arabidopsis thaliana
AT3G52580 0.5kb upstream 0.5kb upstream 500 false Chr3: 19502723-19503222 Arabidopsis thaliana
AT3G52580 0.5kb downstream 0.5kb downstream 2251 true Chr3: 19503223-19505473 Arabidopsis thaliana
AT3G52580 0.5kb downstream 0.5kb downstream 500 false Chr3: 19504974-19505473 Arabidopsis thaliana
AT3G52580 1.0kb upstream 1.0kb upstream 2751 true Chr3: 19502223-19504973 Arabidopsis thaliana
AT3G52580 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19502223-19503222 Arabidopsis thaliana
AT3G52580 1.0kb downstream 1.0kb downstream 2751 true Chr3: 19503223-19505973 Arabidopsis thaliana
AT3G52580 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19504974-19505973 Arabidopsis thaliana
AT3G52580 2.0kb upstream 2.0kb upstream 3751 true Chr3: 19501223-19504973 Arabidopsis thaliana
AT3G52580 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19501223-19503222 Arabidopsis thaliana
AT3G52580 2.0kb downstream 2.0kb downstream 3751 true Chr3: 19503223-19506973 Arabidopsis thaliana
AT3G52580 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19504974-19506973 Arabidopsis thaliana
AT3G52580 5.0kb upstream 5.0kb upstream 6751 true Chr3: 19498223-19504973 Arabidopsis thaliana
AT3G52580 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19498223-19503222 Arabidopsis thaliana
AT3G52580 5.0kb downstream 5.0kb downstream 6751 true Chr3: 19503223-19509973 Arabidopsis thaliana
AT3G52580 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19504974-19509973 Arabidopsis thaliana
AT3G52580 10.0kb upstream 10.0kb upstream 11751 true Chr3: 19493223-19504973 Arabidopsis thaliana
AT3G52580 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19493223-19503222 Arabidopsis thaliana
AT3G52580 10.0kb downstream 10.0kb downstream 11751 true Chr3: 19503223-19514973 Arabidopsis thaliana
AT3G52580 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19504974-19514973 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381749 5261 Brassicaceae View MSA
123835821 5264 Brassicales-Malvales View MSA
124347859 5266 SBM View MSA
124245081 5268 Malvidae View MSA
124067342 5270 Rosid View MSA
123748294 5271 Pentapetalae View MSA
122796164 5272 Eudicot View MSA
122046051 5273 Angiosperm View MSA
121350914 5274 Embryophyte View MSA
123426853 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.448        
cufflinks 43.065     High  
cufflinks 24.11        
cufflinks 49.486     High  
cufflinks 20.775       Low
cufflinks 56.258     High High

0 Strain