Gene : AT3G52490 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11638//PTHR11638:SF69 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Genomic Order:  4275
Name:  ? AT3G52490 Secondary Identifier:  ? PAC:19662878
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G52490 0.5kb upstream 0.5kb upstream 3721 true Chr3: 19455699-19459419 Arabidopsis thaliana
AT3G52490 0.5kb upstream 0.5kb upstream 500 false Chr3: 19458920-19459419 Arabidopsis thaliana
AT3G52490 0.5kb downstream 0.5kb downstream 3721 true Chr3: 19455199-19458919 Arabidopsis thaliana
AT3G52490 0.5kb downstream 0.5kb downstream 500 false Chr3: 19455199-19455698 Arabidopsis thaliana
AT3G52490 1.0kb upstream 1.0kb upstream 4221 true Chr3: 19455699-19459919 Arabidopsis thaliana
AT3G52490 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19458920-19459919 Arabidopsis thaliana
AT3G52490 1.0kb downstream 1.0kb downstream 4221 true Chr3: 19454699-19458919 Arabidopsis thaliana
AT3G52490 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19454699-19455698 Arabidopsis thaliana
AT3G52490 2.0kb upstream 2.0kb upstream 5221 true Chr3: 19455699-19460919 Arabidopsis thaliana
AT3G52490 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19458920-19460919 Arabidopsis thaliana
AT3G52490 2.0kb downstream 2.0kb downstream 5221 true Chr3: 19453699-19458919 Arabidopsis thaliana
AT3G52490 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19453699-19455698 Arabidopsis thaliana
AT3G52490 5.0kb upstream 5.0kb upstream 8221 true Chr3: 19455699-19463919 Arabidopsis thaliana
AT3G52490 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19458920-19463919 Arabidopsis thaliana
AT3G52490 5.0kb downstream 5.0kb downstream 8221 true Chr3: 19450699-19458919 Arabidopsis thaliana
AT3G52490 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19450699-19455698 Arabidopsis thaliana
AT3G52490 10.0kb upstream 10.0kb upstream 13221 true Chr3: 19455699-19468919 Arabidopsis thaliana
AT3G52490 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19458920-19468919 Arabidopsis thaliana
AT3G52490 10.0kb downstream 10.0kb downstream 13221 true Chr3: 19445699-19458919 Arabidopsis thaliana
AT3G52490 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19445699-19455698 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367447 5261 Brassicaceae View MSA
123833946 5264 Brassicales-Malvales View MSA
124337005 5266 SBM View MSA
124244342 5268 Malvidae View MSA
124070007 5270 Rosid View MSA
123743418 5271 Pentapetalae View MSA
122787302 5272 Eudicot View MSA
122049419 5273 Angiosperm View MSA
121351273 5274 Embryophyte View MSA
123382090 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.215        
cufflinks 10.745        
cufflinks 2.626        
cufflinks 15.06       High
cufflinks 2.143       Low
cufflinks 7.445        

0 Strain