Gene : AT3G52260 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11079//PTHR11079:SF98 - CYTOSINE DEAMINASE // PROTEIN ZK287.7 Genomic Order:  4252
Name:  ? AT3G52260 Secondary Identifier:  ? PAC:19658937
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G52260 0.5kb upstream 0.5kb upstream 3788 true Chr3: 19383266-19387053 Arabidopsis thaliana
AT3G52260 0.5kb upstream 0.5kb upstream 500 false Chr3: 19386554-19387053 Arabidopsis thaliana
AT3G52260 0.5kb downstream 0.5kb downstream 3788 true Chr3: 19382766-19386553 Arabidopsis thaliana
AT3G52260 0.5kb downstream 0.5kb downstream 500 false Chr3: 19382766-19383265 Arabidopsis thaliana
AT3G52260 1.0kb upstream 1.0kb upstream 4288 true Chr3: 19383266-19387553 Arabidopsis thaliana
AT3G52260 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19386554-19387553 Arabidopsis thaliana
AT3G52260 1.0kb downstream 1.0kb downstream 4288 true Chr3: 19382266-19386553 Arabidopsis thaliana
AT3G52260 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19382266-19383265 Arabidopsis thaliana
AT3G52260 2.0kb upstream 2.0kb upstream 5288 true Chr3: 19383266-19388553 Arabidopsis thaliana
AT3G52260 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19386554-19388553 Arabidopsis thaliana
AT3G52260 2.0kb downstream 2.0kb downstream 5288 true Chr3: 19381266-19386553 Arabidopsis thaliana
AT3G52260 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19381266-19383265 Arabidopsis thaliana
AT3G52260 5.0kb upstream 5.0kb upstream 8288 true Chr3: 19383266-19391553 Arabidopsis thaliana
AT3G52260 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19386554-19391553 Arabidopsis thaliana
AT3G52260 5.0kb downstream 5.0kb downstream 8288 true Chr3: 19378266-19386553 Arabidopsis thaliana
AT3G52260 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19378266-19383265 Arabidopsis thaliana
AT3G52260 10.0kb upstream 10.0kb upstream 13288 true Chr3: 19383266-19396553 Arabidopsis thaliana
AT3G52260 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19386554-19396553 Arabidopsis thaliana
AT3G52260 10.0kb downstream 10.0kb downstream 13288 true Chr3: 19373266-19386553 Arabidopsis thaliana
AT3G52260 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19373266-19383265 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367781 5261 Brassicaceae View MSA
123827480 5264 Brassicales-Malvales View MSA
124341474 5266 SBM View MSA
124237628 5268 Malvidae View MSA
124066425 5270 Rosid View MSA
123737257 5271 Pentapetalae View MSA
122788829 5272 Eudicot View MSA
122047050 5273 Angiosperm View MSA
121344286 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.857        
cufflinks 1.637       High
cufflinks 0.96        
cufflinks 1.568        
cufflinks 0.835       Low
cufflinks 1.374        

0 Strain