Gene : AT3G52050 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10133:SF22 - 5'-3' EXONUCLEASE FAMILY PROTEIN Genomic Order:  4228
Name:  ? AT3G52050 Secondary Identifier:  ? PAC:19659399
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G52050 0.5kb upstream 0.5kb upstream 5090 true Chr3: 19304491-19309580 Arabidopsis thaliana
AT3G52050 0.5kb upstream 0.5kb upstream 500 false Chr3: 19304491-19304990 Arabidopsis thaliana
AT3G52050 0.5kb downstream 0.5kb downstream 5090 true Chr3: 19304991-19310080 Arabidopsis thaliana
AT3G52050 0.5kb downstream 0.5kb downstream 500 false Chr3: 19309581-19310080 Arabidopsis thaliana
AT3G52050 1.0kb upstream 1.0kb upstream 5590 true Chr3: 19303991-19309580 Arabidopsis thaliana
AT3G52050 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19303991-19304990 Arabidopsis thaliana
AT3G52050 1.0kb downstream 1.0kb downstream 5590 true Chr3: 19304991-19310580 Arabidopsis thaliana
AT3G52050 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19309581-19310580 Arabidopsis thaliana
AT3G52050 2.0kb upstream 2.0kb upstream 6590 true Chr3: 19302991-19309580 Arabidopsis thaliana
AT3G52050 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19302991-19304990 Arabidopsis thaliana
AT3G52050 2.0kb downstream 2.0kb downstream 6590 true Chr3: 19304991-19311580 Arabidopsis thaliana
AT3G52050 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19309581-19311580 Arabidopsis thaliana
AT3G52050 5.0kb upstream 5.0kb upstream 9590 true Chr3: 19299991-19309580 Arabidopsis thaliana
AT3G52050 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19299991-19304990 Arabidopsis thaliana
AT3G52050 5.0kb downstream 5.0kb downstream 9590 true Chr3: 19304991-19314580 Arabidopsis thaliana
AT3G52050 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19309581-19314580 Arabidopsis thaliana
AT3G52050 10.0kb upstream 10.0kb upstream 14590 true Chr3: 19294991-19309580 Arabidopsis thaliana
AT3G52050 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19294991-19304990 Arabidopsis thaliana
AT3G52050 10.0kb downstream 10.0kb downstream 14590 true Chr3: 19304991-19319580 Arabidopsis thaliana
AT3G52050 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19309581-19319580 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368111 5261 Brassicaceae View MSA
123829307 5264 Brassicales-Malvales View MSA
124321589 5266 SBM View MSA
124244620 5268 Malvidae View MSA
124063709 5270 Rosid View MSA
123739108 5271 Pentapetalae View MSA
122787577 5272 Eudicot View MSA
122042646 5273 Angiosperm View MSA
121346899 5274 Embryophyte View MSA
123425715 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.749        
cufflinks 0.531        
cufflinks 0.746        
cufflinks 0.477        
cufflinks 0.712        
cufflinks 0.456       Low

0 Strain