Gene : NRPB11 A. thaliana TAIR10
Primary Identifier:  ? AT3G52090 Defline:  (1 of 1) K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J)
Genomic Order:  4232 Name:  ? AT3G52090
Secondary Identifier:  ? PAC:19658815
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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G52090 0.5kb upstream 0.5kb upstream 1775 true Chr3: 19317849-19319623 Arabidopsis thaliana
AT3G52090 0.5kb upstream 0.5kb upstream 500 false Chr3: 19319124-19319623 Arabidopsis thaliana
AT3G52090 0.5kb downstream 0.5kb downstream 1775 true Chr3: 19317349-19319123 Arabidopsis thaliana
AT3G52090 0.5kb downstream 0.5kb downstream 500 false Chr3: 19317349-19317848 Arabidopsis thaliana
AT3G52090 1.0kb upstream 1.0kb upstream 2275 true Chr3: 19317849-19320123 Arabidopsis thaliana
AT3G52090 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19319124-19320123 Arabidopsis thaliana
AT3G52090 1.0kb downstream 1.0kb downstream 2275 true Chr3: 19316849-19319123 Arabidopsis thaliana
AT3G52090 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19316849-19317848 Arabidopsis thaliana
AT3G52090 2.0kb upstream 2.0kb upstream 3275 true Chr3: 19317849-19321123 Arabidopsis thaliana
AT3G52090 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19319124-19321123 Arabidopsis thaliana
AT3G52090 2.0kb downstream 2.0kb downstream 3275 true Chr3: 19315849-19319123 Arabidopsis thaliana
AT3G52090 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19315849-19317848 Arabidopsis thaliana
AT3G52090 5.0kb upstream 5.0kb upstream 6275 true Chr3: 19317849-19324123 Arabidopsis thaliana
AT3G52090 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19319124-19324123 Arabidopsis thaliana
AT3G52090 5.0kb downstream 5.0kb downstream 6275 true Chr3: 19312849-19319123 Arabidopsis thaliana
AT3G52090 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19312849-19317848 Arabidopsis thaliana
AT3G52090 10.0kb upstream 10.0kb upstream 11275 true Chr3: 19317849-19329123 Arabidopsis thaliana
AT3G52090 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19319124-19329123 Arabidopsis thaliana
AT3G52090 10.0kb downstream 10.0kb downstream 11275 true Chr3: 19307849-19319123 Arabidopsis thaliana
AT3G52090 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19307849-19317848 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329697 5261 Brassicaceae Singleton cluster - no MSA
123837189 5264 Brassicales-Malvales View MSA
124339301 5266 SBM View MSA
124249264 5268 Malvidae View MSA
124064272 5270 Rosid View MSA
123749269 5271 Pentapetalae View MSA
122790811 5272 Eudicot View MSA
122043921 5273 Angiosperm View MSA
121349469 5274 Embryophyte View MSA
123424853 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.619       Low
cufflinks 16.432       High
cufflinks 12.464       Low
cufflinks 15.662        
cufflinks 13.788        
cufflinks 15.174        

0 Strain