Gene : AT3G51620 A. thaliana TAIR10
Defline:  (1 of 3) PTHR23092//PTHR23092:SF30 - TOPOISOMERASE-RELATED PROTEIN // NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN-RELATED Genomic Order:  4180
Name:  ? AT3G51620 Secondary Identifier:  ? PAC:19662033
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G51620 0.5kb upstream 0.5kb upstream 5091 true Chr3: 19143152-19148242 Arabidopsis thaliana
AT3G51620 0.5kb upstream 0.5kb upstream 500 false Chr3: 19143152-19143651 Arabidopsis thaliana
AT3G51620 0.5kb downstream 0.5kb downstream 5091 true Chr3: 19143652-19148742 Arabidopsis thaliana
AT3G51620 0.5kb downstream 0.5kb downstream 500 false Chr3: 19148243-19148742 Arabidopsis thaliana
AT3G51620 1.0kb upstream 1.0kb upstream 5591 true Chr3: 19142652-19148242 Arabidopsis thaliana
AT3G51620 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19142652-19143651 Arabidopsis thaliana
AT3G51620 1.0kb downstream 1.0kb downstream 5591 true Chr3: 19143652-19149242 Arabidopsis thaliana
AT3G51620 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19148243-19149242 Arabidopsis thaliana
AT3G51620 2.0kb upstream 2.0kb upstream 6591 true Chr3: 19141652-19148242 Arabidopsis thaliana
AT3G51620 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19141652-19143651 Arabidopsis thaliana
AT3G51620 2.0kb downstream 2.0kb downstream 6591 true Chr3: 19143652-19150242 Arabidopsis thaliana
AT3G51620 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19148243-19150242 Arabidopsis thaliana
AT3G51620 5.0kb upstream 5.0kb upstream 9591 true Chr3: 19138652-19148242 Arabidopsis thaliana
AT3G51620 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19138652-19143651 Arabidopsis thaliana
AT3G51620 5.0kb downstream 5.0kb downstream 9591 true Chr3: 19143652-19153242 Arabidopsis thaliana
AT3G51620 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19148243-19153242 Arabidopsis thaliana
AT3G51620 10.0kb upstream 10.0kb upstream 14591 true Chr3: 19133652-19148242 Arabidopsis thaliana
AT3G51620 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19133652-19143651 Arabidopsis thaliana
AT3G51620 10.0kb downstream 10.0kb downstream 14591 true Chr3: 19143652-19158242 Arabidopsis thaliana
AT3G51620 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19148243-19158242 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360249 5261 Brassicaceae View MSA
123834360 5264 Brassicales-Malvales View MSA
124338817 5266 SBM View MSA
124248322 5268 Malvidae View MSA
124069788 5270 Rosid View MSA
123744457 5271 Pentapetalae View MSA
122791987 5272 Eudicot View MSA
122043315 5273 Angiosperm View MSA
121310107 5274 Embryophyte View MSA
123428025 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.548        
cufflinks 5.246        
cufflinks 3.057       Low
cufflinks 5.696       High
cufflinks 3.559        
cufflinks 4.917        

0 Strain