Gene : AT3G51110 A. thaliana TAIR10
Defline:  (1 of 4) PTHR11246//PTHR11246:SF14 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Genomic Order:  4128
Name:  ? AT3G51110 Secondary Identifier:  ? PAC:19660944
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G51110 0.5kb upstream 0.5kb upstream 2723 true Chr3: 18983126-18985848 Arabidopsis thaliana
AT3G51110 0.5kb upstream 0.5kb upstream 500 false Chr3: 18983126-18983625 Arabidopsis thaliana
AT3G51110 0.5kb downstream 0.5kb downstream 2723 true Chr3: 18983626-18986348 Arabidopsis thaliana
AT3G51110 0.5kb downstream 0.5kb downstream 500 false Chr3: 18985849-18986348 Arabidopsis thaliana
AT3G51110 1.0kb upstream 1.0kb upstream 3223 true Chr3: 18982626-18985848 Arabidopsis thaliana
AT3G51110 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18982626-18983625 Arabidopsis thaliana
AT3G51110 1.0kb downstream 1.0kb downstream 3223 true Chr3: 18983626-18986848 Arabidopsis thaliana
AT3G51110 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18985849-18986848 Arabidopsis thaliana
AT3G51110 2.0kb upstream 2.0kb upstream 4223 true Chr3: 18981626-18985848 Arabidopsis thaliana
AT3G51110 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18981626-18983625 Arabidopsis thaliana
AT3G51110 2.0kb downstream 2.0kb downstream 4223 true Chr3: 18983626-18987848 Arabidopsis thaliana
AT3G51110 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18985849-18987848 Arabidopsis thaliana
AT3G51110 5.0kb upstream 5.0kb upstream 7223 true Chr3: 18978626-18985848 Arabidopsis thaliana
AT3G51110 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18978626-18983625 Arabidopsis thaliana
AT3G51110 5.0kb downstream 5.0kb downstream 7223 true Chr3: 18983626-18990848 Arabidopsis thaliana
AT3G51110 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18985849-18990848 Arabidopsis thaliana
AT3G51110 10.0kb upstream 10.0kb upstream 12223 true Chr3: 18973626-18985848 Arabidopsis thaliana
AT3G51110 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18973626-18983625 Arabidopsis thaliana
AT3G51110 10.0kb downstream 10.0kb downstream 12223 true Chr3: 18983626-18995848 Arabidopsis thaliana
AT3G51110 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18985849-18995848 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329911 5261 Brassicaceae Singleton cluster - no MSA
123839664 5264 Brassicales-Malvales View MSA
124322633 5266 SBM View MSA
124169187 5268 Malvidae View MSA
124066520 5270 Rosid View MSA
123747782 5271 Pentapetalae View MSA
122796524 5272 Eudicot View MSA
122043261 5273 Angiosperm View MSA
121344122 5274 Embryophyte View MSA
123426639 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.731        
cufflinks 5.05       Low
cufflinks 7.027        
cufflinks 6.154        
cufflinks 9.144       High
cufflinks 5.743        

0 Strain