Gene : AT3G17940 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10091//PTHR10091:SF8 - ALDOSE-1-EPIMERASE // SUBFAMILY NOT NAMED Genomic Order:  1851
Name:  ? AT3G17940 Secondary Identifier:  ? PAC:19661018
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY66-422 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G17940 0.5kb upstream 0.5kb upstream 2319 true Chr3: 6143519-6145837 Arabidopsis thaliana
AT3G17940 0.5kb upstream 0.5kb upstream 500 false Chr3: 6145338-6145837 Arabidopsis thaliana
AT3G17940 0.5kb downstream 0.5kb downstream 2319 true Chr3: 6143019-6145337 Arabidopsis thaliana
AT3G17940 0.5kb downstream 0.5kb downstream 500 false Chr3: 6143019-6143518 Arabidopsis thaliana
AT3G17940 1.0kb upstream 1.0kb upstream 2819 true Chr3: 6143519-6146337 Arabidopsis thaliana
AT3G17940 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6145338-6146337 Arabidopsis thaliana
AT3G17940 1.0kb downstream 1.0kb downstream 2819 true Chr3: 6142519-6145337 Arabidopsis thaliana
AT3G17940 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6142519-6143518 Arabidopsis thaliana
AT3G17940 2.0kb upstream 2.0kb upstream 3819 true Chr3: 6143519-6147337 Arabidopsis thaliana
AT3G17940 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6145338-6147337 Arabidopsis thaliana
AT3G17940 2.0kb downstream 2.0kb downstream 3819 true Chr3: 6141519-6145337 Arabidopsis thaliana
AT3G17940 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6141519-6143518 Arabidopsis thaliana
AT3G17940 5.0kb upstream 5.0kb upstream 6819 true Chr3: 6143519-6150337 Arabidopsis thaliana
AT3G17940 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6145338-6150337 Arabidopsis thaliana
AT3G17940 5.0kb downstream 5.0kb downstream 6819 true Chr3: 6138519-6145337 Arabidopsis thaliana
AT3G17940 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6138519-6143518 Arabidopsis thaliana
AT3G17940 10.0kb upstream 10.0kb upstream 11819 true Chr3: 6143519-6155337 Arabidopsis thaliana
AT3G17940 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6145338-6155337 Arabidopsis thaliana
AT3G17940 10.0kb downstream 10.0kb downstream 11819 true Chr3: 6133519-6145337 Arabidopsis thaliana
AT3G17940 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6133519-6143518 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368169 5261 Brassicaceae View MSA
123828040 5264 Brassicales-Malvales View MSA
124342660 5266 SBM View MSA
124251209 5268 Malvidae View MSA
124068882 5270 Rosid View MSA
123737067 5271 Pentapetalae View MSA
122789360 5272 Eudicot View MSA
122043649 5273 Angiosperm View MSA
121346493 5274 Embryophyte View MSA
123425845 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.178        
cufflinks 26.711        
cufflinks 22.621       Low
cufflinks 31.24     High High
cufflinks 23.569        
cufflinks 29.099        

0 Strain