Gene : ATL2 A. thaliana TAIR10
Primary Identifier:  ? AT3G16720 Defline:  (1 of 2) PTHR14155//PTHR14155:SF99 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL3
Genomic Order:  1718 Name:  ? AT3G16720
Secondary Identifier:  ? PAC:19661696
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G16720 0.5kb upstream 0.5kb upstream 1890 true Chr3: 5692238-5694127 Arabidopsis thaliana
AT3G16720 0.5kb upstream 0.5kb upstream 500 false Chr3: 5692238-5692737 Arabidopsis thaliana
AT3G16720 0.5kb downstream 0.5kb downstream 1890 true Chr3: 5692738-5694627 Arabidopsis thaliana
AT3G16720 0.5kb downstream 0.5kb downstream 500 false Chr3: 5694128-5694627 Arabidopsis thaliana
AT3G16720 1.0kb upstream 1.0kb upstream 2390 true Chr3: 5691738-5694127 Arabidopsis thaliana
AT3G16720 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5691738-5692737 Arabidopsis thaliana
AT3G16720 1.0kb downstream 1.0kb downstream 2390 true Chr3: 5692738-5695127 Arabidopsis thaliana
AT3G16720 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5694128-5695127 Arabidopsis thaliana
AT3G16720 2.0kb upstream 2.0kb upstream 3390 true Chr3: 5690738-5694127 Arabidopsis thaliana
AT3G16720 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5690738-5692737 Arabidopsis thaliana
AT3G16720 2.0kb downstream 2.0kb downstream 3390 true Chr3: 5692738-5696127 Arabidopsis thaliana
AT3G16720 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5694128-5696127 Arabidopsis thaliana
AT3G16720 5.0kb upstream 5.0kb upstream 6390 true Chr3: 5687738-5694127 Arabidopsis thaliana
AT3G16720 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5687738-5692737 Arabidopsis thaliana
AT3G16720 5.0kb downstream 5.0kb downstream 6390 true Chr3: 5692738-5699127 Arabidopsis thaliana
AT3G16720 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5694128-5699127 Arabidopsis thaliana
AT3G16720 10.0kb upstream 10.0kb upstream 11390 true Chr3: 5682738-5694127 Arabidopsis thaliana
AT3G16720 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5682738-5692737 Arabidopsis thaliana
AT3G16720 10.0kb downstream 10.0kb downstream 11390 true Chr3: 5692738-5704127 Arabidopsis thaliana
AT3G16720 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5694128-5704127 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124349697 5266 SBM View MSA
122367238 5261 Brassicaceae View MSA
123827609 5264 Brassicales-Malvales View MSA
124253774 5268 Malvidae View MSA
124069328 5270 Rosid View MSA
123753111 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.62        
cufflinks 43.378     High  
cufflinks 22.578        
cufflinks 55.046     High High
cufflinks 18.814       Low
cufflinks 40.353     High  

0 Strain