Gene : AT3G16650 A. thaliana TAIR10
Defline:  (1 of 2) PTHR19923:SF0 - PLEIOTROPIC REGULATOR 1 Genomic Order:  1710
Name:  ? AT3G16650 Secondary Identifier:  ? PAC:19659163
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G16650 0.5kb upstream 0.5kb upstream 4758 true Chr3: 5670567-5675324 Arabidopsis thaliana
AT3G16650 0.5kb upstream 0.5kb upstream 500 false Chr3: 5670567-5671066 Arabidopsis thaliana
AT3G16650 0.5kb downstream 0.5kb downstream 4758 true Chr3: 5671067-5675824 Arabidopsis thaliana
AT3G16650 0.5kb downstream 0.5kb downstream 500 false Chr3: 5675325-5675824 Arabidopsis thaliana
AT3G16650 1.0kb upstream 1.0kb upstream 5258 true Chr3: 5670067-5675324 Arabidopsis thaliana
AT3G16650 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5670067-5671066 Arabidopsis thaliana
AT3G16650 1.0kb downstream 1.0kb downstream 5258 true Chr3: 5671067-5676324 Arabidopsis thaliana
AT3G16650 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5675325-5676324 Arabidopsis thaliana
AT3G16650 2.0kb upstream 2.0kb upstream 6258 true Chr3: 5669067-5675324 Arabidopsis thaliana
AT3G16650 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5669067-5671066 Arabidopsis thaliana
AT3G16650 2.0kb downstream 2.0kb downstream 6258 true Chr3: 5671067-5677324 Arabidopsis thaliana
AT3G16650 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5675325-5677324 Arabidopsis thaliana
AT3G16650 5.0kb upstream 5.0kb upstream 9258 true Chr3: 5666067-5675324 Arabidopsis thaliana
AT3G16650 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5666067-5671066 Arabidopsis thaliana
AT3G16650 5.0kb downstream 5.0kb downstream 9258 true Chr3: 5671067-5680324 Arabidopsis thaliana
AT3G16650 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5675325-5680324 Arabidopsis thaliana
AT3G16650 10.0kb upstream 10.0kb upstream 14258 true Chr3: 5661067-5675324 Arabidopsis thaliana
AT3G16650 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5661067-5671066 Arabidopsis thaliana
AT3G16650 10.0kb downstream 10.0kb downstream 14258 true Chr3: 5671067-5685324 Arabidopsis thaliana
AT3G16650 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5675325-5685324 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343688 5261 Brassicaceae View MSA
123837654 5264 Brassicales-Malvales View MSA
124338237 5266 SBM View MSA
124240081 5268 Malvidae View MSA
124068732 5270 Rosid View MSA
123753307 5271 Pentapetalae View MSA
122797815 5272 Eudicot View MSA
122050667 5273 Angiosperm View MSA
121343955 5274 Embryophyte View MSA
123424287 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.798        
cufflinks 4.403        
cufflinks 0.946       Low
cufflinks 3.774        
cufflinks 1.133       Low
cufflinks 4.487        

0 Strain