Gene : AT3G13010 A. thaliana TAIR10
Defline:  (1 of 3) PTHR32166:SF20 - HAT TRANSPOSON SUPERFAMILY PROTEIN Genomic Order:  1287
Name:  ? AT3G13010 Secondary Identifier:  ? PAC:19658739
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13010 0.5kb upstream 0.5kb upstream 2303 true Chr3: 4162931-4165233 Arabidopsis thaliana
AT3G13010 0.5kb upstream 0.5kb upstream 500 false Chr3: 4164734-4165233 Arabidopsis thaliana
AT3G13010 0.5kb downstream 0.5kb downstream 2303 true Chr3: 4162431-4164733 Arabidopsis thaliana
AT3G13010 0.5kb downstream 0.5kb downstream 500 false Chr3: 4162431-4162930 Arabidopsis thaliana
AT3G13010 1.0kb upstream 1.0kb upstream 2803 true Chr3: 4162931-4165733 Arabidopsis thaliana
AT3G13010 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4164734-4165733 Arabidopsis thaliana
AT3G13010 1.0kb downstream 1.0kb downstream 2803 true Chr3: 4161931-4164733 Arabidopsis thaliana
AT3G13010 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4161931-4162930 Arabidopsis thaliana
AT3G13010 2.0kb upstream 2.0kb upstream 3803 true Chr3: 4162931-4166733 Arabidopsis thaliana
AT3G13010 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4164734-4166733 Arabidopsis thaliana
AT3G13010 2.0kb downstream 2.0kb downstream 3803 true Chr3: 4160931-4164733 Arabidopsis thaliana
AT3G13010 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4160931-4162930 Arabidopsis thaliana
AT3G13010 5.0kb upstream 5.0kb upstream 6803 true Chr3: 4162931-4169733 Arabidopsis thaliana
AT3G13010 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4164734-4169733 Arabidopsis thaliana
AT3G13010 5.0kb downstream 5.0kb downstream 6803 true Chr3: 4157931-4164733 Arabidopsis thaliana
AT3G13010 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4157931-4162930 Arabidopsis thaliana
AT3G13010 10.0kb upstream 10.0kb upstream 11803 true Chr3: 4162931-4174733 Arabidopsis thaliana
AT3G13010 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4164734-4174733 Arabidopsis thaliana
AT3G13010 10.0kb downstream 10.0kb downstream 11803 true Chr3: 4152931-4164733 Arabidopsis thaliana
AT3G13010 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4152931-4162930 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380911 5261 Brassicaceae View MSA
123832953 5264 Brassicales-Malvales View MSA
124321835 5266 SBM View MSA
124242529 5268 Malvidae View MSA
124050464 5270 Rosid View MSA
123752967 5271 Pentapetalae View MSA
122794205 5272 Eudicot View MSA
122051703 5273 Angiosperm View MSA
121347820 5274 Embryophyte View MSA
123428458 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.015     Low  
cufflinks 0.009     Low Low
cufflinks 0.009     Low Low
cufflinks 0.035     Low  
cufflinks 0.03     Low  
cufflinks 0.044     Low High

0 Strain