Gene : AT3G12850 A. thaliana TAIR10
Defline:  (1 of 1) KOG0686 - COP9 signalosome, subunit CSN1 Genomic Order:  1268
Name:  ? AT3G12850 Secondary Identifier:  ? PAC:19660467
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G12850 0.5kb upstream 0.5kb upstream 2430 true Chr3: 4088374-4090803 Arabidopsis thaliana
AT3G12850 0.5kb upstream 0.5kb upstream 500 false Chr3: 4090304-4090803 Arabidopsis thaliana
AT3G12850 0.5kb downstream 0.5kb downstream 2430 true Chr3: 4087874-4090303 Arabidopsis thaliana
AT3G12850 0.5kb downstream 0.5kb downstream 500 false Chr3: 4087874-4088373 Arabidopsis thaliana
AT3G12850 1.0kb upstream 1.0kb upstream 2930 true Chr3: 4088374-4091303 Arabidopsis thaliana
AT3G12850 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4090304-4091303 Arabidopsis thaliana
AT3G12850 1.0kb downstream 1.0kb downstream 2930 true Chr3: 4087374-4090303 Arabidopsis thaliana
AT3G12850 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4087374-4088373 Arabidopsis thaliana
AT3G12850 2.0kb upstream 2.0kb upstream 3930 true Chr3: 4088374-4092303 Arabidopsis thaliana
AT3G12850 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4090304-4092303 Arabidopsis thaliana
AT3G12850 2.0kb downstream 2.0kb downstream 3930 true Chr3: 4086374-4090303 Arabidopsis thaliana
AT3G12850 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4086374-4088373 Arabidopsis thaliana
AT3G12850 5.0kb upstream 5.0kb upstream 6930 true Chr3: 4088374-4095303 Arabidopsis thaliana
AT3G12850 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4090304-4095303 Arabidopsis thaliana
AT3G12850 5.0kb downstream 5.0kb downstream 6930 true Chr3: 4083374-4090303 Arabidopsis thaliana
AT3G12850 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4083374-4088373 Arabidopsis thaliana
AT3G12850 10.0kb upstream 10.0kb upstream 11930 true Chr3: 4088374-4100303 Arabidopsis thaliana
AT3G12850 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4090304-4100303 Arabidopsis thaliana
AT3G12850 10.0kb downstream 10.0kb downstream 11930 true Chr3: 4078374-4090303 Arabidopsis thaliana
AT3G12850 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4078374-4088373 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329868 5261 Brassicaceae Singleton cluster - no MSA
123771152 5264 Brassicales-Malvales Singleton cluster - no MSA
124269684 5266 SBM Singleton cluster - no MSA
124244381 5268 Malvidae View MSA
124062748 5270 Rosid View MSA
123740454 5271 Pentapetalae View MSA
122790295 5272 Eudicot View MSA
122047675 5273 Angiosperm View MSA
121344985 5274 Embryophyte View MSA
123424538 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain