Gene : AT3G13160 A. thaliana TAIR10
Defline:  (1 of 423) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1304
Name:  ? AT3G13160 Secondary Identifier:  ? PAC:19664160
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13160 0.5kb upstream 0.5kb upstream 1816 true Chr3: 4229971-4231786 Arabidopsis thaliana
AT3G13160 0.5kb upstream 0.5kb upstream 500 false Chr3: 4231287-4231786 Arabidopsis thaliana
AT3G13160 0.5kb downstream 0.5kb downstream 1816 true Chr3: 4229471-4231286 Arabidopsis thaliana
AT3G13160 0.5kb downstream 0.5kb downstream 500 false Chr3: 4229471-4229970 Arabidopsis thaliana
AT3G13160 1.0kb upstream 1.0kb upstream 2316 true Chr3: 4229971-4232286 Arabidopsis thaliana
AT3G13160 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4231287-4232286 Arabidopsis thaliana
AT3G13160 1.0kb downstream 1.0kb downstream 2316 true Chr3: 4228971-4231286 Arabidopsis thaliana
AT3G13160 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4228971-4229970 Arabidopsis thaliana
AT3G13160 2.0kb upstream 2.0kb upstream 3316 true Chr3: 4229971-4233286 Arabidopsis thaliana
AT3G13160 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4231287-4233286 Arabidopsis thaliana
AT3G13160 2.0kb downstream 2.0kb downstream 3316 true Chr3: 4227971-4231286 Arabidopsis thaliana
AT3G13160 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4227971-4229970 Arabidopsis thaliana
AT3G13160 5.0kb upstream 5.0kb upstream 6316 true Chr3: 4229971-4236286 Arabidopsis thaliana
AT3G13160 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4231287-4236286 Arabidopsis thaliana
AT3G13160 5.0kb downstream 5.0kb downstream 6316 true Chr3: 4224971-4231286 Arabidopsis thaliana
AT3G13160 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4224971-4229970 Arabidopsis thaliana
AT3G13160 10.0kb upstream 10.0kb upstream 11316 true Chr3: 4229971-4241286 Arabidopsis thaliana
AT3G13160 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4231287-4241286 Arabidopsis thaliana
AT3G13160 10.0kb downstream 10.0kb downstream 11316 true Chr3: 4219971-4231286 Arabidopsis thaliana
AT3G13160 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4219971-4229970 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374696 5261 Brassicaceae View MSA
123835608 5264 Brassicales-Malvales View MSA
124339441 5266 SBM View MSA
124239127 5268 Malvidae View MSA
124063725 5270 Rosid View MSA
123743446 5271 Pentapetalae View MSA
122788248 5272 Eudicot View MSA
122047755 5273 Angiosperm View MSA
121310787 5274 Embryophyte View MSA
123348188 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.045        
cufflinks 17.05        
cufflinks 8.121        
cufflinks 15.58        
cufflinks 5.917       Low
cufflinks 20.492       High

0 Strain