Gene : AT3G11890 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10627//PTHR10627:SF43 - SCP160 // SUBFAMILY NOT NAMED Genomic Order:  1166
Name:  ? AT3G11890 Secondary Identifier:  ? PAC:19660230
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G11890 0.5kb upstream 0.5kb upstream 2734 true Chr3: 3755042-3757775 Arabidopsis thaliana
AT3G11890 0.5kb upstream 0.5kb upstream 500 false Chr3: 3755042-3755541 Arabidopsis thaliana
AT3G11890 0.5kb downstream 0.5kb downstream 2734 true Chr3: 3755542-3758275 Arabidopsis thaliana
AT3G11890 0.5kb downstream 0.5kb downstream 500 false Chr3: 3757776-3758275 Arabidopsis thaliana
AT3G11890 1.0kb upstream 1.0kb upstream 3234 true Chr3: 3754542-3757775 Arabidopsis thaliana
AT3G11890 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3754542-3755541 Arabidopsis thaliana
AT3G11890 1.0kb downstream 1.0kb downstream 3234 true Chr3: 3755542-3758775 Arabidopsis thaliana
AT3G11890 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3757776-3758775 Arabidopsis thaliana
AT3G11890 2.0kb upstream 2.0kb upstream 4234 true Chr3: 3753542-3757775 Arabidopsis thaliana
AT3G11890 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3753542-3755541 Arabidopsis thaliana
AT3G11890 2.0kb downstream 2.0kb downstream 4234 true Chr3: 3755542-3759775 Arabidopsis thaliana
AT3G11890 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3757776-3759775 Arabidopsis thaliana
AT3G11890 5.0kb upstream 5.0kb upstream 7234 true Chr3: 3750542-3757775 Arabidopsis thaliana
AT3G11890 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3750542-3755541 Arabidopsis thaliana
AT3G11890 5.0kb downstream 5.0kb downstream 7234 true Chr3: 3755542-3762775 Arabidopsis thaliana
AT3G11890 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3757776-3762775 Arabidopsis thaliana
AT3G11890 10.0kb upstream 10.0kb upstream 12234 true Chr3: 3745542-3757775 Arabidopsis thaliana
AT3G11890 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3745542-3755541 Arabidopsis thaliana
AT3G11890 10.0kb downstream 10.0kb downstream 12234 true Chr3: 3755542-3767775 Arabidopsis thaliana
AT3G11890 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3757776-3767775 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121512126 5273 Angiosperm View MSA
122380517 5261 Brassicaceae View MSA
123802758 5264 Brassicales-Malvales View MSA
124299925 5266 SBM View MSA
124151225 5268 Malvidae View MSA
123876704 5270 Rosid View MSA
123460344 5271 Pentapetalae View MSA
122495720 5272 Eudicot View MSA
120785152 5274 Embryophyte View MSA
122827025 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.251       Low
cufflinks 4.329        
cufflinks 3.198       Low
cufflinks 4.815       High
cufflinks 3.732        
cufflinks 4.05        

0 Strain