Gene : RPS5A A. thaliana TAIR10
Primary Identifier:  ? AT3G11940 Defline:  (1 of 2) K02989 - small subunit ribosomal protein S5e (RP-S5e, RPS5)
Genomic Order:  1171 Name:  ? AT3G11940
Secondary Identifier:  ? PAC:19658791
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G11940 0.5kb upstream 0.5kb upstream 2112 true Chr3: 3777895-3780006 Arabidopsis thaliana
AT3G11940 0.5kb upstream 0.5kb upstream 500 false Chr3: 3779507-3780006 Arabidopsis thaliana
AT3G11940 0.5kb downstream 0.5kb downstream 2112 true Chr3: 3777395-3779506 Arabidopsis thaliana
AT3G11940 0.5kb downstream 0.5kb downstream 500 false Chr3: 3777395-3777894 Arabidopsis thaliana
AT3G11940 1.0kb upstream 1.0kb upstream 2612 true Chr3: 3777895-3780506 Arabidopsis thaliana
AT3G11940 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3779507-3780506 Arabidopsis thaliana
AT3G11940 1.0kb downstream 1.0kb downstream 2612 true Chr3: 3776895-3779506 Arabidopsis thaliana
AT3G11940 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3776895-3777894 Arabidopsis thaliana
AT3G11940 2.0kb upstream 2.0kb upstream 3612 true Chr3: 3777895-3781506 Arabidopsis thaliana
AT3G11940 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3779507-3781506 Arabidopsis thaliana
AT3G11940 2.0kb downstream 2.0kb downstream 3612 true Chr3: 3775895-3779506 Arabidopsis thaliana
AT3G11940 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3775895-3777894 Arabidopsis thaliana
AT3G11940 5.0kb upstream 5.0kb upstream 6612 true Chr3: 3777895-3784506 Arabidopsis thaliana
AT3G11940 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3779507-3784506 Arabidopsis thaliana
AT3G11940 5.0kb downstream 5.0kb downstream 6612 true Chr3: 3772895-3779506 Arabidopsis thaliana
AT3G11940 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3772895-3777894 Arabidopsis thaliana
AT3G11940 10.0kb upstream 10.0kb upstream 11612 true Chr3: 3777895-3789506 Arabidopsis thaliana
AT3G11940 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3779507-3789506 Arabidopsis thaliana
AT3G11940 10.0kb downstream 10.0kb downstream 11612 true Chr3: 3767895-3779506 Arabidopsis thaliana
AT3G11940 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3767895-3777894 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381573 5261 Brassicaceae View MSA
123840434 5264 Brassicales-Malvales View MSA
124338311 5266 SBM View MSA
124246877 5268 Malvidae View MSA
124064641 5270 Rosid View MSA
123749742 5271 Pentapetalae View MSA
122785829 5272 Eudicot View MSA
122048966 5273 Angiosperm View MSA
121345669 5274 Embryophyte View MSA
123423957 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 83.108     High  
cufflinks 161.198     High  
cufflinks 87.447     High  
cufflinks 154.359     High  
cufflinks 74.402     High Low
cufflinks 165.85     High  

0 Strain