Gene : AT3G27180 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11061//PTHR11061:SF29 - RNA M5U METHYLTRANSFERASE FAMILY // SUBFAMILY NOT NAMED Genomic Order:  2872
Name:  ? AT3G27180 Secondary Identifier:  ? PAC:19659012
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27180 0.5kb upstream 0.5kb upstream 3733 true Chr3: 10026837-10030569 Arabidopsis thaliana
AT3G27180 0.5kb upstream 0.5kb upstream 500 false Chr3: 10030070-10030569 Arabidopsis thaliana
AT3G27180 0.5kb downstream 0.5kb downstream 3733 true Chr3: 10026337-10030069 Arabidopsis thaliana
AT3G27180 0.5kb downstream 0.5kb downstream 500 false Chr3: 10026337-10026836 Arabidopsis thaliana
AT3G27180 1.0kb upstream 1.0kb upstream 4233 true Chr3: 10026837-10031069 Arabidopsis thaliana
AT3G27180 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10030070-10031069 Arabidopsis thaliana
AT3G27180 1.0kb downstream 1.0kb downstream 4233 true Chr3: 10025837-10030069 Arabidopsis thaliana
AT3G27180 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10025837-10026836 Arabidopsis thaliana
AT3G27180 2.0kb upstream 2.0kb upstream 5233 true Chr3: 10026837-10032069 Arabidopsis thaliana
AT3G27180 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10030070-10032069 Arabidopsis thaliana
AT3G27180 2.0kb downstream 2.0kb downstream 5233 true Chr3: 10024837-10030069 Arabidopsis thaliana
AT3G27180 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10024837-10026836 Arabidopsis thaliana
AT3G27180 5.0kb upstream 5.0kb upstream 8233 true Chr3: 10026837-10035069 Arabidopsis thaliana
AT3G27180 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10030070-10035069 Arabidopsis thaliana
AT3G27180 5.0kb downstream 5.0kb downstream 8233 true Chr3: 10021837-10030069 Arabidopsis thaliana
AT3G27180 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10021837-10026836 Arabidopsis thaliana
AT3G27180 10.0kb upstream 10.0kb upstream 13233 true Chr3: 10026837-10040069 Arabidopsis thaliana
AT3G27180 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10030070-10040069 Arabidopsis thaliana
AT3G27180 10.0kb downstream 10.0kb downstream 13233 true Chr3: 10016837-10030069 Arabidopsis thaliana
AT3G27180 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10016837-10026836 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375751 5261 Brassicaceae View MSA
123832680 5264 Brassicales-Malvales View MSA
124337597 5266 SBM View MSA
124241900 5268 Malvidae View MSA
124063737 5270 Rosid View MSA
123738222 5271 Pentapetalae View MSA
122796833 5272 Eudicot View MSA
122044630 5273 Angiosperm View MSA
121346457 5274 Embryophyte View MSA
123428846 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.094       High
cufflinks 2.41        
cufflinks 5.754        
cufflinks 2.011        
cufflinks 4.872        
cufflinks 1.866       Low

0 Strain