Gene : AT3G27240 A. thaliana TAIR10
Defline:  (1 of 2) K00413 - ubiquinol-cytochrome c reductase cytochrome c1 subunit (CYC1, CYT1, petC) Genomic Order:  2878
Name:  ? AT3G27240 Secondary Identifier:  ? PAC:19659481
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-7279 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27240 0.5kb upstream 0.5kb upstream 3428 true Chr3: 10055789-10059216 Arabidopsis thaliana
AT3G27240 0.5kb upstream 0.5kb upstream 500 false Chr3: 10058717-10059216 Arabidopsis thaliana
AT3G27240 0.5kb downstream 0.5kb downstream 3428 true Chr3: 10055289-10058716 Arabidopsis thaliana
AT3G27240 0.5kb downstream 0.5kb downstream 500 false Chr3: 10055289-10055788 Arabidopsis thaliana
AT3G27240 1.0kb upstream 1.0kb upstream 3928 true Chr3: 10055789-10059716 Arabidopsis thaliana
AT3G27240 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10058717-10059716 Arabidopsis thaliana
AT3G27240 1.0kb downstream 1.0kb downstream 3928 true Chr3: 10054789-10058716 Arabidopsis thaliana
AT3G27240 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10054789-10055788 Arabidopsis thaliana
AT3G27240 2.0kb upstream 2.0kb upstream 4928 true Chr3: 10055789-10060716 Arabidopsis thaliana
AT3G27240 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10058717-10060716 Arabidopsis thaliana
AT3G27240 2.0kb downstream 2.0kb downstream 4928 true Chr3: 10053789-10058716 Arabidopsis thaliana
AT3G27240 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10053789-10055788 Arabidopsis thaliana
AT3G27240 5.0kb upstream 5.0kb upstream 7928 true Chr3: 10055789-10063716 Arabidopsis thaliana
AT3G27240 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10058717-10063716 Arabidopsis thaliana
AT3G27240 5.0kb downstream 5.0kb downstream 7928 true Chr3: 10050789-10058716 Arabidopsis thaliana
AT3G27240 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10050789-10055788 Arabidopsis thaliana
AT3G27240 10.0kb upstream 10.0kb upstream 12928 true Chr3: 10055789-10068716 Arabidopsis thaliana
AT3G27240 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10058717-10068716 Arabidopsis thaliana
AT3G27240 10.0kb downstream 10.0kb downstream 12928 true Chr3: 10045789-10058716 Arabidopsis thaliana
AT3G27240 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10045789-10055788 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376312 5261 Brassicaceae View MSA
123830928 5264 Brassicales-Malvales View MSA
124345956 5266 SBM View MSA
124248685 5268 Malvidae View MSA
124073211 5270 Rosid View MSA
123745446 5271 Pentapetalae View MSA
122788425 5272 Eudicot View MSA
122048813 5273 Angiosperm View MSA
121344559 5274 Embryophyte View MSA
123427665 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.187       Low
cufflinks 29.967     High  
cufflinks 29.43     High  
cufflinks 32.856     High  
cufflinks 30.173     High  
cufflinks 35.33     High High

0 Strain