Gene : AT3G27090 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10857//PTHR10857:SF43 - COPINE // SUBFAMILY NOT NAMED Genomic Order:  2863
Name:  ? AT3G27090 Secondary Identifier:  ? PAC:19658503
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G27090 0.5kb upstream 0.5kb upstream 2787 true Chr3: 9989040-9991826 Arabidopsis thaliana
AT3G27090 0.5kb upstream 0.5kb upstream 500 false Chr3: 9989040-9989539 Arabidopsis thaliana
AT3G27090 0.5kb downstream 0.5kb downstream 2787 true Chr3: 9989540-9992326 Arabidopsis thaliana
AT3G27090 0.5kb downstream 0.5kb downstream 500 false Chr3: 9991827-9992326 Arabidopsis thaliana
AT3G27090 1.0kb upstream 1.0kb upstream 3287 true Chr3: 9988540-9991826 Arabidopsis thaliana
AT3G27090 1.0kb upstream 1.0kb upstream 1000 false Chr3: 9988540-9989539 Arabidopsis thaliana
AT3G27090 1.0kb downstream 1.0kb downstream 3287 true Chr3: 9989540-9992826 Arabidopsis thaliana
AT3G27090 1.0kb downstream 1.0kb downstream 1000 false Chr3: 9991827-9992826 Arabidopsis thaliana
AT3G27090 2.0kb upstream 2.0kb upstream 4287 true Chr3: 9987540-9991826 Arabidopsis thaliana
AT3G27090 2.0kb upstream 2.0kb upstream 2000 false Chr3: 9987540-9989539 Arabidopsis thaliana
AT3G27090 2.0kb downstream 2.0kb downstream 4287 true Chr3: 9989540-9993826 Arabidopsis thaliana
AT3G27090 2.0kb downstream 2.0kb downstream 2000 false Chr3: 9991827-9993826 Arabidopsis thaliana
AT3G27090 5.0kb upstream 5.0kb upstream 7287 true Chr3: 9984540-9991826 Arabidopsis thaliana
AT3G27090 5.0kb upstream 5.0kb upstream 5000 false Chr3: 9984540-9989539 Arabidopsis thaliana
AT3G27090 5.0kb downstream 5.0kb downstream 7287 true Chr3: 9989540-9996826 Arabidopsis thaliana
AT3G27090 5.0kb downstream 5.0kb downstream 5000 false Chr3: 9991827-9996826 Arabidopsis thaliana
AT3G27090 10.0kb upstream 10.0kb upstream 12287 true Chr3: 9979540-9991826 Arabidopsis thaliana
AT3G27090 10.0kb upstream 10.0kb upstream 10000 false Chr3: 9979540-9989539 Arabidopsis thaliana
AT3G27090 10.0kb downstream 10.0kb downstream 12287 true Chr3: 9989540-10001826 Arabidopsis thaliana
AT3G27090 10.0kb downstream 10.0kb downstream 10000 false Chr3: 9991827-10001826 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375417 5261 Brassicaceae View MSA
123830882 5264 Brassicales-Malvales View MSA
124336404 5266 SBM View MSA
124241474 5268 Malvidae View MSA
124062843 5270 Rosid View MSA
123750755 5271 Pentapetalae View MSA
122796494 5272 Eudicot View MSA
122041662 5273 Angiosperm View MSA
121346693 5274 Embryophyte View MSA
123380427 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.9     High  
cufflinks 107.161     High High
cufflinks 47.943     High Low
cufflinks 84.775     High  
cufflinks 52.025     High  
cufflinks 70.467     High  

0 Strain