Gene : LTA2 A. thaliana TAIR10
Primary Identifier:  ? AT3G25860 Defline:  (1 of 2) PTHR23151//PTHR23151:SF61 - DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED // SUBFAMILY NOT NAMED
Genomic Order:  2720 Name:  ? AT3G25860
Secondary Identifier:  ? PAC:19660913
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5173 Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PYRUVDEHYD-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G25860 0.5kb upstream 0.5kb upstream 2728 true Chr3: 9460060-9462787 Arabidopsis thaliana
AT3G25860 0.5kb upstream 0.5kb upstream 500 false Chr3: 9460060-9460559 Arabidopsis thaliana
AT3G25860 0.5kb downstream 0.5kb downstream 2728 true Chr3: 9460560-9463287 Arabidopsis thaliana
AT3G25860 0.5kb downstream 0.5kb downstream 500 false Chr3: 9462788-9463287 Arabidopsis thaliana
AT3G25860 1.0kb upstream 1.0kb upstream 3228 true Chr3: 9459560-9462787 Arabidopsis thaliana
AT3G25860 1.0kb upstream 1.0kb upstream 1000 false Chr3: 9459560-9460559 Arabidopsis thaliana
AT3G25860 1.0kb downstream 1.0kb downstream 3228 true Chr3: 9460560-9463787 Arabidopsis thaliana
AT3G25860 1.0kb downstream 1.0kb downstream 1000 false Chr3: 9462788-9463787 Arabidopsis thaliana
AT3G25860 2.0kb upstream 2.0kb upstream 4228 true Chr3: 9458560-9462787 Arabidopsis thaliana
AT3G25860 2.0kb upstream 2.0kb upstream 2000 false Chr3: 9458560-9460559 Arabidopsis thaliana
AT3G25860 2.0kb downstream 2.0kb downstream 4228 true Chr3: 9460560-9464787 Arabidopsis thaliana
AT3G25860 2.0kb downstream 2.0kb downstream 2000 false Chr3: 9462788-9464787 Arabidopsis thaliana
AT3G25860 5.0kb upstream 5.0kb upstream 7228 true Chr3: 9455560-9462787 Arabidopsis thaliana
AT3G25860 5.0kb upstream 5.0kb upstream 5000 false Chr3: 9455560-9460559 Arabidopsis thaliana
AT3G25860 5.0kb downstream 5.0kb downstream 7228 true Chr3: 9460560-9467787 Arabidopsis thaliana
AT3G25860 5.0kb downstream 5.0kb downstream 5000 false Chr3: 9462788-9467787 Arabidopsis thaliana
AT3G25860 10.0kb upstream 10.0kb upstream 12228 true Chr3: 9450560-9462787 Arabidopsis thaliana
AT3G25860 10.0kb upstream 10.0kb upstream 10000 false Chr3: 9450560-9460559 Arabidopsis thaliana
AT3G25860 10.0kb downstream 10.0kb downstream 12228 true Chr3: 9460560-9472787 Arabidopsis thaliana
AT3G25860 10.0kb downstream 10.0kb downstream 10000 false Chr3: 9462788-9472787 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368345 5261 Brassicaceae View MSA
123834524 5264 Brassicales-Malvales View MSA
124341076 5266 SBM View MSA
124252180 5268 Malvidae View MSA
124064326 5270 Rosid View MSA
123740980 5271 Pentapetalae View MSA
122792137 5272 Eudicot View MSA
122047464 5273 Angiosperm View MSA
121347035 5274 Embryophyte View MSA
123424416 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.145     High  
cufflinks 24.011       Low
cufflinks 39.82     High High
cufflinks 28.715        
cufflinks 29.92     High  
cufflinks 36.11     High  

0 Strain