Gene : AT3G23480 A. thaliana TAIR10
Defline:  (1 of 4) 2.1.1.79 - Cyclopropane-fatty-acyl-phospholipid synthase / Unsaturated-phospholipid methyltransferase Genomic Order:  2464
Name:  ? AT3G23480 Secondary Identifier:  ? PAC:19661273
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-4942 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G23480 0.5kb upstream 0.5kb upstream 4616 true Chr3: 8418301-8422916 Arabidopsis thaliana
AT3G23480 0.5kb upstream 0.5kb upstream 500 false Chr3: 8418301-8418800 Arabidopsis thaliana
AT3G23480 0.5kb downstream 0.5kb downstream 4616 true Chr3: 8418801-8423416 Arabidopsis thaliana
AT3G23480 0.5kb downstream 0.5kb downstream 500 false Chr3: 8422917-8423416 Arabidopsis thaliana
AT3G23480 1.0kb upstream 1.0kb upstream 5116 true Chr3: 8417801-8422916 Arabidopsis thaliana
AT3G23480 1.0kb upstream 1.0kb upstream 1000 false Chr3: 8417801-8418800 Arabidopsis thaliana
AT3G23480 1.0kb downstream 1.0kb downstream 5116 true Chr3: 8418801-8423916 Arabidopsis thaliana
AT3G23480 1.0kb downstream 1.0kb downstream 1000 false Chr3: 8422917-8423916 Arabidopsis thaliana
AT3G23480 2.0kb upstream 2.0kb upstream 6116 true Chr3: 8416801-8422916 Arabidopsis thaliana
AT3G23480 2.0kb upstream 2.0kb upstream 2000 false Chr3: 8416801-8418800 Arabidopsis thaliana
AT3G23480 2.0kb downstream 2.0kb downstream 6116 true Chr3: 8418801-8424916 Arabidopsis thaliana
AT3G23480 2.0kb downstream 2.0kb downstream 2000 false Chr3: 8422917-8424916 Arabidopsis thaliana
AT3G23480 5.0kb upstream 5.0kb upstream 9116 true Chr3: 8413801-8422916 Arabidopsis thaliana
AT3G23480 5.0kb upstream 5.0kb upstream 5000 false Chr3: 8413801-8418800 Arabidopsis thaliana
AT3G23480 5.0kb downstream 5.0kb downstream 9116 true Chr3: 8418801-8427916 Arabidopsis thaliana
AT3G23480 5.0kb downstream 5.0kb downstream 5000 false Chr3: 8422917-8427916 Arabidopsis thaliana
AT3G23480 10.0kb upstream 10.0kb upstream 14116 true Chr3: 8408801-8422916 Arabidopsis thaliana
AT3G23480 10.0kb upstream 10.0kb upstream 10000 false Chr3: 8408801-8418800 Arabidopsis thaliana
AT3G23480 10.0kb downstream 10.0kb downstream 14116 true Chr3: 8418801-8432916 Arabidopsis thaliana
AT3G23480 10.0kb downstream 10.0kb downstream 10000 false Chr3: 8422917-8432916 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121579664 5273 Angiosperm View MSA
122329946 5261 Brassicaceae Singleton cluster - no MSA
123771224 5264 Brassicales-Malvales Singleton cluster - no MSA
124269756 5266 SBM Singleton cluster - no MSA
124255141 5268 Malvidae View MSA
123953090 5270 Rosid View MSA
123530618 5271 Pentapetalae View MSA
122565572 5272 Eudicot View MSA
120852119 5274 Embryophyte View MSA
122893268 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.083        
cufflinks 0.07     Low  
cufflinks 5.626        
cufflinks 0.113     Low  
cufflinks 5.729        
cufflinks 0.046     Low Low

0 Strain