Gene : AT3G23180 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31474:SF1 - HR-LIKE LESION-INDUCING PROTEIN-RELATED Genomic Order:  2431
Name:  ? AT3G23180 Secondary Identifier:  ? PAC:19663158
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G23180 0.5kb upstream 0.5kb upstream 1860 true Chr3: 8276537-8278396 Arabidopsis thaliana
AT3G23180 0.5kb upstream 0.5kb upstream 500 false Chr3: 8276537-8277036 Arabidopsis thaliana
AT3G23180 0.5kb downstream 0.5kb downstream 1860 true Chr3: 8277037-8278896 Arabidopsis thaliana
AT3G23180 0.5kb downstream 0.5kb downstream 500 false Chr3: 8278397-8278896 Arabidopsis thaliana
AT3G23180 1.0kb upstream 1.0kb upstream 2360 true Chr3: 8276037-8278396 Arabidopsis thaliana
AT3G23180 1.0kb upstream 1.0kb upstream 1000 false Chr3: 8276037-8277036 Arabidopsis thaliana
AT3G23180 1.0kb downstream 1.0kb downstream 2360 true Chr3: 8277037-8279396 Arabidopsis thaliana
AT3G23180 1.0kb downstream 1.0kb downstream 1000 false Chr3: 8278397-8279396 Arabidopsis thaliana
AT3G23180 2.0kb upstream 2.0kb upstream 3360 true Chr3: 8275037-8278396 Arabidopsis thaliana
AT3G23180 2.0kb upstream 2.0kb upstream 2000 false Chr3: 8275037-8277036 Arabidopsis thaliana
AT3G23180 2.0kb downstream 2.0kb downstream 3360 true Chr3: 8277037-8280396 Arabidopsis thaliana
AT3G23180 2.0kb downstream 2.0kb downstream 2000 false Chr3: 8278397-8280396 Arabidopsis thaliana
AT3G23180 5.0kb upstream 5.0kb upstream 6360 true Chr3: 8272037-8278396 Arabidopsis thaliana
AT3G23180 5.0kb upstream 5.0kb upstream 5000 false Chr3: 8272037-8277036 Arabidopsis thaliana
AT3G23180 5.0kb downstream 5.0kb downstream 6360 true Chr3: 8277037-8283396 Arabidopsis thaliana
AT3G23180 5.0kb downstream 5.0kb downstream 5000 false Chr3: 8278397-8283396 Arabidopsis thaliana
AT3G23180 10.0kb upstream 10.0kb upstream 11360 true Chr3: 8267037-8278396 Arabidopsis thaliana
AT3G23180 10.0kb upstream 10.0kb upstream 10000 false Chr3: 8267037-8277036 Arabidopsis thaliana
AT3G23180 10.0kb downstream 10.0kb downstream 11360 true Chr3: 8277037-8288396 Arabidopsis thaliana
AT3G23180 10.0kb downstream 10.0kb downstream 10000 false Chr3: 8278397-8288396 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510187 5273 Angiosperm View MSA
122360316 5261 Brassicaceae View MSA
123797932 5264 Brassicales-Malvales View MSA
124295629 5266 SBM View MSA
124148016 5268 Malvidae View MSA
123874103 5270 Rosid View MSA
123458125 5271 Pentapetalae View MSA
122493536 5272 Eudicot View MSA
120783298 5274 Embryophyte View MSA
122825324 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.034     Low  
cufflinks 4.948        
cufflinks 0.032     Low  
cufflinks 9.405       High
cufflinks 0.012     Low Low
cufflinks 5.988        

0 Strain