Gene : AT3G21600 A. thaliana TAIR10
Defline:  (1 of 3) PTHR21068:SF5 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIL23-RELATED Genomic Order:  2252
Name:  ? AT3G21600 Secondary Identifier:  ? PAC:19661773
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G21600 0.5kb upstream 0.5kb upstream 2401 true Chr3: 7606507-7608907 Arabidopsis thaliana
AT3G21600 0.5kb upstream 0.5kb upstream 500 false Chr3: 7608408-7608907 Arabidopsis thaliana
AT3G21600 0.5kb downstream 0.5kb downstream 2401 true Chr3: 7606007-7608407 Arabidopsis thaliana
AT3G21600 0.5kb downstream 0.5kb downstream 500 false Chr3: 7606007-7606506 Arabidopsis thaliana
AT3G21600 1.0kb upstream 1.0kb upstream 2901 true Chr3: 7606507-7609407 Arabidopsis thaliana
AT3G21600 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7608408-7609407 Arabidopsis thaliana
AT3G21600 1.0kb downstream 1.0kb downstream 2901 true Chr3: 7605507-7608407 Arabidopsis thaliana
AT3G21600 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7605507-7606506 Arabidopsis thaliana
AT3G21600 2.0kb upstream 2.0kb upstream 3901 true Chr3: 7606507-7610407 Arabidopsis thaliana
AT3G21600 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7608408-7610407 Arabidopsis thaliana
AT3G21600 2.0kb downstream 2.0kb downstream 3901 true Chr3: 7604507-7608407 Arabidopsis thaliana
AT3G21600 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7604507-7606506 Arabidopsis thaliana
AT3G21600 5.0kb upstream 5.0kb upstream 6901 true Chr3: 7606507-7613407 Arabidopsis thaliana
AT3G21600 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7608408-7613407 Arabidopsis thaliana
AT3G21600 5.0kb downstream 5.0kb downstream 6901 true Chr3: 7601507-7608407 Arabidopsis thaliana
AT3G21600 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7601507-7606506 Arabidopsis thaliana
AT3G21600 10.0kb upstream 10.0kb upstream 11901 true Chr3: 7606507-7618407 Arabidopsis thaliana
AT3G21600 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7608408-7618407 Arabidopsis thaliana
AT3G21600 10.0kb downstream 10.0kb downstream 11901 true Chr3: 7596507-7608407 Arabidopsis thaliana
AT3G21600 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7596507-7606506 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026413 5273 Angiosperm View MSA
122374331 5261 Brassicaceae View MSA
123835408 5264 Brassicales-Malvales View MSA
124343666 5266 SBM View MSA
124243636 5268 Malvidae View MSA
124068163 5270 Rosid View MSA
123740247 5271 Pentapetalae View MSA
122787553 5272 Eudicot View MSA
121296318 5274 Embryophyte View MSA
123334500 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.989       Low
cufflinks 19.468       High
cufflinks 1.165        
cufflinks 16.86       High
cufflinks 1.522        
cufflinks 8.883        

0 Strain