Gene : UBP7 A. thaliana TAIR10
Primary Identifier:  ? AT3G21280 Defline:  (1 of 2) K11843 - ubiquitin carboxyl-terminal hydrolase 14 [EC:3.4.19.12] (USP14, UBP6)
Genomic Order:  2215 Name:  ? AT3G21280
Secondary Identifier:  ? PAC:19661134
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G21280 0.5kb upstream 0.5kb upstream 4584 true Chr3: 7477987-7482570 Arabidopsis thaliana
AT3G21280 0.5kb upstream 0.5kb upstream 500 false Chr3: 7482071-7482570 Arabidopsis thaliana
AT3G21280 0.5kb downstream 0.5kb downstream 4584 true Chr3: 7477487-7482070 Arabidopsis thaliana
AT3G21280 0.5kb downstream 0.5kb downstream 500 false Chr3: 7477487-7477986 Arabidopsis thaliana
AT3G21280 1.0kb upstream 1.0kb upstream 5084 true Chr3: 7477987-7483070 Arabidopsis thaliana
AT3G21280 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7482071-7483070 Arabidopsis thaliana
AT3G21280 1.0kb downstream 1.0kb downstream 5084 true Chr3: 7476987-7482070 Arabidopsis thaliana
AT3G21280 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7476987-7477986 Arabidopsis thaliana
AT3G21280 2.0kb upstream 2.0kb upstream 6084 true Chr3: 7477987-7484070 Arabidopsis thaliana
AT3G21280 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7482071-7484070 Arabidopsis thaliana
AT3G21280 2.0kb downstream 2.0kb downstream 6084 true Chr3: 7475987-7482070 Arabidopsis thaliana
AT3G21280 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7475987-7477986 Arabidopsis thaliana
AT3G21280 5.0kb upstream 5.0kb upstream 9084 true Chr3: 7477987-7487070 Arabidopsis thaliana
AT3G21280 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7482071-7487070 Arabidopsis thaliana
AT3G21280 5.0kb downstream 5.0kb downstream 9084 true Chr3: 7472987-7482070 Arabidopsis thaliana
AT3G21280 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7472987-7477986 Arabidopsis thaliana
AT3G21280 10.0kb upstream 10.0kb upstream 14084 true Chr3: 7477987-7492070 Arabidopsis thaliana
AT3G21280 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7482071-7492070 Arabidopsis thaliana
AT3G21280 10.0kb downstream 10.0kb downstream 14084 true Chr3: 7467987-7482070 Arabidopsis thaliana
AT3G21280 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7467987-7477986 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376170 5261 Brassicaceae View MSA
123801162 5264 Brassicales-Malvales View MSA
124298497 5266 SBM View MSA
124244727 5268 Malvidae View MSA
124066467 5270 Rosid View MSA
123739899 5271 Pentapetalae View MSA
122787327 5272 Eudicot View MSA
122042667 5273 Angiosperm View MSA
121345593 5274 Embryophyte View MSA
123424639 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.308        
cufflinks 5.856       High
cufflinks 3.942        
cufflinks 5.177        
cufflinks 3.764       Low
cufflinks 5.131        

0 Strain