Gene : NBS1 A. thaliana TAIR10
Primary Identifier:  ? AT3G02680 Defline:  (1 of 1) K10867 - nijmegen breakage syndrome protein 1 (NBN, NBS1)
Genomic Order:  196 Name:  ? AT3G02680
Secondary Identifier:  ? PAC:19661024
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G02680 0.5kb upstream 0.5kb upstream 3682 true Chr3: 575878-579559 Arabidopsis thaliana
AT3G02680 0.5kb upstream 0.5kb upstream 500 false Chr3: 575878-576377 Arabidopsis thaliana
AT3G02680 0.5kb downstream 0.5kb downstream 3682 true Chr3: 576378-580059 Arabidopsis thaliana
AT3G02680 0.5kb downstream 0.5kb downstream 500 false Chr3: 579560-580059 Arabidopsis thaliana
AT3G02680 1.0kb upstream 1.0kb upstream 4182 true Chr3: 575378-579559 Arabidopsis thaliana
AT3G02680 1.0kb upstream 1.0kb upstream 1000 false Chr3: 575378-576377 Arabidopsis thaliana
AT3G02680 1.0kb downstream 1.0kb downstream 4182 true Chr3: 576378-580559 Arabidopsis thaliana
AT3G02680 1.0kb downstream 1.0kb downstream 1000 false Chr3: 579560-580559 Arabidopsis thaliana
AT3G02680 2.0kb upstream 2.0kb upstream 5182 true Chr3: 574378-579559 Arabidopsis thaliana
AT3G02680 2.0kb upstream 2.0kb upstream 2000 false Chr3: 574378-576377 Arabidopsis thaliana
AT3G02680 2.0kb downstream 2.0kb downstream 5182 true Chr3: 576378-581559 Arabidopsis thaliana
AT3G02680 2.0kb downstream 2.0kb downstream 2000 false Chr3: 579560-581559 Arabidopsis thaliana
AT3G02680 5.0kb upstream 5.0kb upstream 8182 true Chr3: 571378-579559 Arabidopsis thaliana
AT3G02680 5.0kb upstream 5.0kb upstream 5000 false Chr3: 571378-576377 Arabidopsis thaliana
AT3G02680 5.0kb downstream 5.0kb downstream 8182 true Chr3: 576378-584559 Arabidopsis thaliana
AT3G02680 5.0kb downstream 5.0kb downstream 5000 false Chr3: 579560-584559 Arabidopsis thaliana
AT3G02680 10.0kb upstream 10.0kb upstream 13182 true Chr3: 566378-579559 Arabidopsis thaliana
AT3G02680 10.0kb upstream 10.0kb upstream 10000 false Chr3: 566378-576377 Arabidopsis thaliana
AT3G02680 10.0kb downstream 10.0kb downstream 13182 true Chr3: 576378-589559 Arabidopsis thaliana
AT3G02680 10.0kb downstream 10.0kb downstream 10000 false Chr3: 579560-589559 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368623 5261 Brassicaceae View MSA
123833770 5264 Brassicales-Malvales View MSA
124321896 5266 SBM View MSA
124243815 5268 Malvidae View MSA
124064299 5270 Rosid View MSA
123737066 5271 Pentapetalae View MSA
122786000 5272 Eudicot View MSA
122047101 5273 Angiosperm View MSA
121349305 5274 Embryophyte View MSA
123381266 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.786        
cufflinks 2.523        
cufflinks 1.174       Low
cufflinks 2.542        
cufflinks 1.03       Low
cufflinks 2.494        

0 Strain