Gene : AT3G02370 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21027 - TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54 Genomic Order:  161
Name:  ? AT3G02370 Secondary Identifier:  ? PAC:19661837
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G02370 0.5kb upstream 0.5kb upstream 1624 true Chr3: 483991-485614 Arabidopsis thaliana
AT3G02370 0.5kb upstream 0.5kb upstream 500 false Chr3: 483991-484490 Arabidopsis thaliana
AT3G02370 0.5kb downstream 0.5kb downstream 1624 true Chr3: 484491-486114 Arabidopsis thaliana
AT3G02370 0.5kb downstream 0.5kb downstream 500 false Chr3: 485615-486114 Arabidopsis thaliana
AT3G02370 1.0kb upstream 1.0kb upstream 2124 true Chr3: 483491-485614 Arabidopsis thaliana
AT3G02370 1.0kb upstream 1.0kb upstream 1000 false Chr3: 483491-484490 Arabidopsis thaliana
AT3G02370 1.0kb downstream 1.0kb downstream 2124 true Chr3: 484491-486614 Arabidopsis thaliana
AT3G02370 1.0kb downstream 1.0kb downstream 1000 false Chr3: 485615-486614 Arabidopsis thaliana
AT3G02370 2.0kb upstream 2.0kb upstream 3124 true Chr3: 482491-485614 Arabidopsis thaliana
AT3G02370 2.0kb upstream 2.0kb upstream 2000 false Chr3: 482491-484490 Arabidopsis thaliana
AT3G02370 2.0kb downstream 2.0kb downstream 3124 true Chr3: 484491-487614 Arabidopsis thaliana
AT3G02370 2.0kb downstream 2.0kb downstream 2000 false Chr3: 485615-487614 Arabidopsis thaliana
AT3G02370 5.0kb upstream 5.0kb upstream 6124 true Chr3: 479491-485614 Arabidopsis thaliana
AT3G02370 5.0kb upstream 5.0kb upstream 5000 false Chr3: 479491-484490 Arabidopsis thaliana
AT3G02370 5.0kb downstream 5.0kb downstream 6124 true Chr3: 484491-490614 Arabidopsis thaliana
AT3G02370 5.0kb downstream 5.0kb downstream 5000 false Chr3: 485615-490614 Arabidopsis thaliana
AT3G02370 10.0kb upstream 10.0kb upstream 11124 true Chr3: 474491-485614 Arabidopsis thaliana
AT3G02370 10.0kb upstream 10.0kb upstream 10000 false Chr3: 474491-484490 Arabidopsis thaliana
AT3G02370 10.0kb downstream 10.0kb downstream 11124 true Chr3: 484491-495614 Arabidopsis thaliana
AT3G02370 10.0kb downstream 10.0kb downstream 10000 false Chr3: 485615-495614 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121494358 5273 Angiosperm Singleton cluster - no MSA
122330002 5261 Brassicaceae Singleton cluster - no MSA
123771278 5264 Brassicales-Malvales Singleton cluster - no MSA
124269809 5266 SBM Singleton cluster - no MSA
124125924 5268 Malvidae Singleton cluster - no MSA
123854869 5270 Rosid Singleton cluster - no MSA
123440869 5271 Pentapetalae Singleton cluster - no MSA
122476454 5272 Eudicot Singleton cluster - no MSA
120767727 5274 Embryophyte Singleton cluster - no MSA
122810119 5275 Viridiplantae Singleton cluster - no MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.324        
cufflinks 3.411       High
cufflinks 2.171        
cufflinks 3.459       High
cufflinks 1.924       Low
cufflinks 2.927        

0 Strain