Gene : AT3G48710 A. thaliana TAIR10
Defline:  (1 of 3) K17046 - protein DEK (DEK) Genomic Order:  3866
Name:  ? AT3G48710 Secondary Identifier:  ? PAC:19663738
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48710 0.5kb upstream 0.5kb upstream 3790 true Chr3: 18040437-18044226 Arabidopsis thaliana
AT3G48710 0.5kb upstream 0.5kb upstream 500 false Chr3: 18040437-18040936 Arabidopsis thaliana
AT3G48710 0.5kb downstream 0.5kb downstream 3790 true Chr3: 18040937-18044726 Arabidopsis thaliana
AT3G48710 0.5kb downstream 0.5kb downstream 500 false Chr3: 18044227-18044726 Arabidopsis thaliana
AT3G48710 1.0kb upstream 1.0kb upstream 4290 true Chr3: 18039937-18044226 Arabidopsis thaliana
AT3G48710 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18039937-18040936 Arabidopsis thaliana
AT3G48710 1.0kb downstream 1.0kb downstream 4290 true Chr3: 18040937-18045226 Arabidopsis thaliana
AT3G48710 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18044227-18045226 Arabidopsis thaliana
AT3G48710 2.0kb upstream 2.0kb upstream 5290 true Chr3: 18038937-18044226 Arabidopsis thaliana
AT3G48710 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18038937-18040936 Arabidopsis thaliana
AT3G48710 2.0kb downstream 2.0kb downstream 5290 true Chr3: 18040937-18046226 Arabidopsis thaliana
AT3G48710 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18044227-18046226 Arabidopsis thaliana
AT3G48710 5.0kb upstream 5.0kb upstream 8290 true Chr3: 18035937-18044226 Arabidopsis thaliana
AT3G48710 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18035937-18040936 Arabidopsis thaliana
AT3G48710 5.0kb downstream 5.0kb downstream 8290 true Chr3: 18040937-18049226 Arabidopsis thaliana
AT3G48710 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18044227-18049226 Arabidopsis thaliana
AT3G48710 10.0kb upstream 10.0kb upstream 13290 true Chr3: 18030937-18044226 Arabidopsis thaliana
AT3G48710 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18030937-18040936 Arabidopsis thaliana
AT3G48710 10.0kb downstream 10.0kb downstream 13290 true Chr3: 18040937-18054226 Arabidopsis thaliana
AT3G48710 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18044227-18054226 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375237 5261 Brassicaceae View MSA
123841081 5264 Brassicales-Malvales View MSA
124344015 5266 SBM View MSA
124251106 5268 Malvidae View MSA
124072894 5270 Rosid View MSA
123748946 5271 Pentapetalae View MSA
122791456 5272 Eudicot View MSA
122042773 5273 Angiosperm View MSA
121346519 5274 Embryophyte View MSA
123426401 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.873        
cufflinks 13.145       High
cufflinks 6.375        
cufflinks 12.263        
cufflinks 5.906       Low
cufflinks 10.192        

0 Strain