Gene : AT3G13040 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31314:SF8 - MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN Genomic Order:  1290
Name:  ? AT3G13040 Secondary Identifier:  ? PAC:19658640
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13040 0.5kb upstream 0.5kb upstream 3607 true Chr3: 4172142-4175748 Arabidopsis thaliana
AT3G13040 0.5kb upstream 0.5kb upstream 500 false Chr3: 4175249-4175748 Arabidopsis thaliana
AT3G13040 0.5kb downstream 0.5kb downstream 3607 true Chr3: 4171642-4175248 Arabidopsis thaliana
AT3G13040 0.5kb downstream 0.5kb downstream 500 false Chr3: 4171642-4172141 Arabidopsis thaliana
AT3G13040 1.0kb upstream 1.0kb upstream 4107 true Chr3: 4172142-4176248 Arabidopsis thaliana
AT3G13040 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4175249-4176248 Arabidopsis thaliana
AT3G13040 1.0kb downstream 1.0kb downstream 4107 true Chr3: 4171142-4175248 Arabidopsis thaliana
AT3G13040 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4171142-4172141 Arabidopsis thaliana
AT3G13040 2.0kb upstream 2.0kb upstream 5107 true Chr3: 4172142-4177248 Arabidopsis thaliana
AT3G13040 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4175249-4177248 Arabidopsis thaliana
AT3G13040 2.0kb downstream 2.0kb downstream 5107 true Chr3: 4170142-4175248 Arabidopsis thaliana
AT3G13040 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4170142-4172141 Arabidopsis thaliana
AT3G13040 5.0kb upstream 5.0kb upstream 8107 true Chr3: 4172142-4180248 Arabidopsis thaliana
AT3G13040 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4175249-4180248 Arabidopsis thaliana
AT3G13040 5.0kb downstream 5.0kb downstream 8107 true Chr3: 4167142-4175248 Arabidopsis thaliana
AT3G13040 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4167142-4172141 Arabidopsis thaliana
AT3G13040 10.0kb upstream 10.0kb upstream 13107 true Chr3: 4172142-4185248 Arabidopsis thaliana
AT3G13040 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4175249-4185248 Arabidopsis thaliana
AT3G13040 10.0kb downstream 10.0kb downstream 13107 true Chr3: 4162142-4175248 Arabidopsis thaliana
AT3G13040 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4162142-4172141 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376816 5261 Brassicaceae View MSA
123836033 5264 Brassicales-Malvales View MSA
124337319 5266 SBM View MSA
124250473 5268 Malvidae View MSA
124068367 5270 Rosid View MSA
123741625 5271 Pentapetalae View MSA
122798049 5272 Eudicot View MSA
122046922 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121349882 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.441        
cufflinks 6.302        
cufflinks 11.88        
cufflinks 8.246        
cufflinks 13.933       High
cufflinks 3.553       Low

0 Strain