Gene : AOC1 A. thaliana TAIR10
Primary Identifier:  ? AT3G25760 Defline:  (1 of 4) 5.3.99.6 - Allene-oxide cyclase
Genomic Order:  2708 Name:  ? AT3G25760
Secondary Identifier:  ? PAC:19664723
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-735 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G25760 0.5kb upstream 0.5kb upstream 1868 true Chr3: 9403383-9405250 Arabidopsis thaliana
AT3G25760 0.5kb upstream 0.5kb upstream 500 false Chr3: 9403383-9403882 Arabidopsis thaliana
AT3G25760 0.5kb downstream 0.5kb downstream 1868 true Chr3: 9403883-9405750 Arabidopsis thaliana
AT3G25760 0.5kb downstream 0.5kb downstream 500 false Chr3: 9405251-9405750 Arabidopsis thaliana
AT3G25760 1.0kb upstream 1.0kb upstream 2368 true Chr3: 9402883-9405250 Arabidopsis thaliana
AT3G25760 1.0kb upstream 1.0kb upstream 1000 false Chr3: 9402883-9403882 Arabidopsis thaliana
AT3G25760 1.0kb downstream 1.0kb downstream 2368 true Chr3: 9403883-9406250 Arabidopsis thaliana
AT3G25760 1.0kb downstream 1.0kb downstream 1000 false Chr3: 9405251-9406250 Arabidopsis thaliana
AT3G25760 2.0kb upstream 2.0kb upstream 3368 true Chr3: 9401883-9405250 Arabidopsis thaliana
AT3G25760 2.0kb upstream 2.0kb upstream 2000 false Chr3: 9401883-9403882 Arabidopsis thaliana
AT3G25760 2.0kb downstream 2.0kb downstream 3368 true Chr3: 9403883-9407250 Arabidopsis thaliana
AT3G25760 2.0kb downstream 2.0kb downstream 2000 false Chr3: 9405251-9407250 Arabidopsis thaliana
AT3G25760 5.0kb upstream 5.0kb upstream 6368 true Chr3: 9398883-9405250 Arabidopsis thaliana
AT3G25760 5.0kb upstream 5.0kb upstream 5000 false Chr3: 9398883-9403882 Arabidopsis thaliana
AT3G25760 5.0kb downstream 5.0kb downstream 6368 true Chr3: 9403883-9410250 Arabidopsis thaliana
AT3G25760 5.0kb downstream 5.0kb downstream 5000 false Chr3: 9405251-9410250 Arabidopsis thaliana
AT3G25760 10.0kb upstream 10.0kb upstream 11368 true Chr3: 9393883-9405250 Arabidopsis thaliana
AT3G25760 10.0kb upstream 10.0kb upstream 10000 false Chr3: 9393883-9403882 Arabidopsis thaliana
AT3G25760 10.0kb downstream 10.0kb downstream 11368 true Chr3: 9403883-9415250 Arabidopsis thaliana
AT3G25760 10.0kb downstream 10.0kb downstream 10000 false Chr3: 9405251-9415250 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380757 5261 Brassicaceae View MSA
123802886 5264 Brassicales-Malvales View MSA
124348602 5266 SBM View MSA
124252758 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.696     High  
cufflinks 1.462        
cufflinks 184.728     High High
cufflinks 1.65        
cufflinks 270.478     High High
cufflinks 1.825        

0 Strain