Gene : AT3G09980 A. thaliana TAIR10
Defline:  (1 of 6) PTHR21470 - NTKL-BINDING PROTEIN 1 Genomic Order:  955
Name:  ? AT3G09980 Secondary Identifier:  ? PAC:19662944
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G09980 0.5kb upstream 0.5kb upstream 2699 true Chr3: 3068731-3071429 Arabidopsis thaliana
AT3G09980 0.5kb upstream 0.5kb upstream 500 false Chr3: 3068731-3069230 Arabidopsis thaliana
AT3G09980 0.5kb downstream 0.5kb downstream 2699 true Chr3: 3069231-3071929 Arabidopsis thaliana
AT3G09980 0.5kb downstream 0.5kb downstream 500 false Chr3: 3071430-3071929 Arabidopsis thaliana
AT3G09980 1.0kb upstream 1.0kb upstream 3199 true Chr3: 3068231-3071429 Arabidopsis thaliana
AT3G09980 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3068231-3069230 Arabidopsis thaliana
AT3G09980 1.0kb downstream 1.0kb downstream 3199 true Chr3: 3069231-3072429 Arabidopsis thaliana
AT3G09980 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3071430-3072429 Arabidopsis thaliana
AT3G09980 2.0kb upstream 2.0kb upstream 4199 true Chr3: 3067231-3071429 Arabidopsis thaliana
AT3G09980 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3067231-3069230 Arabidopsis thaliana
AT3G09980 2.0kb downstream 2.0kb downstream 4199 true Chr3: 3069231-3073429 Arabidopsis thaliana
AT3G09980 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3071430-3073429 Arabidopsis thaliana
AT3G09980 5.0kb upstream 5.0kb upstream 7199 true Chr3: 3064231-3071429 Arabidopsis thaliana
AT3G09980 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3064231-3069230 Arabidopsis thaliana
AT3G09980 5.0kb downstream 5.0kb downstream 7199 true Chr3: 3069231-3076429 Arabidopsis thaliana
AT3G09980 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3071430-3076429 Arabidopsis thaliana
AT3G09980 10.0kb upstream 10.0kb upstream 12199 true Chr3: 3059231-3071429 Arabidopsis thaliana
AT3G09980 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3059231-3069230 Arabidopsis thaliana
AT3G09980 10.0kb downstream 10.0kb downstream 12199 true Chr3: 3069231-3081429 Arabidopsis thaliana
AT3G09980 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3071430-3081429 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363502 5261 Brassicaceae View MSA
123835886 5264 Brassicales-Malvales View MSA
124348272 5266 SBM View MSA
124245895 5268 Malvidae View MSA
124073883 5270 Rosid View MSA
123746647 5271 Pentapetalae View MSA
122796434 5272 Eudicot View MSA
122043123 5273 Angiosperm View MSA
121348137 5274 Embryophyte View MSA
123380740 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.141        
cufflinks 36.098     High  
cufflinks 15.765       Low
cufflinks 35.572     High  
cufflinks 16.551       Low
cufflinks 39.674     High  

0 Strain