Gene : AT3G09030 A. thaliana TAIR10

Defline:  (1 of 2) PTHR11145 - TUMOR NECROSIS FACTOR-RELATED Genomic Order:  854
Name:  ? AT3G09030 Secondary Identifier:  ? PAC:19663538

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G09030 0.5kb upstream 0.5kb upstream 2226 true Chr3: 2754282-2756507 Arabidopsis thaliana
AT3G09030 0.5kb upstream 0.5kb upstream 500 false Chr3: 2754282-2754781 Arabidopsis thaliana
AT3G09030 0.5kb downstream 0.5kb downstream 2226 true Chr3: 2754782-2757007 Arabidopsis thaliana
AT3G09030 0.5kb downstream 0.5kb downstream 500 false Chr3: 2756508-2757007 Arabidopsis thaliana
AT3G09030 1.0kb upstream 1.0kb upstream 2726 true Chr3: 2753782-2756507 Arabidopsis thaliana
AT3G09030 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2753782-2754781 Arabidopsis thaliana
AT3G09030 1.0kb downstream 1.0kb downstream 2726 true Chr3: 2754782-2757507 Arabidopsis thaliana
AT3G09030 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2756508-2757507 Arabidopsis thaliana
AT3G09030 2.0kb upstream 2.0kb upstream 3726 true Chr3: 2752782-2756507 Arabidopsis thaliana
AT3G09030 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2752782-2754781 Arabidopsis thaliana
AT3G09030 2.0kb downstream 2.0kb downstream 3726 true Chr3: 2754782-2758507 Arabidopsis thaliana
AT3G09030 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2756508-2758507 Arabidopsis thaliana
AT3G09030 5.0kb upstream 5.0kb upstream 6726 true Chr3: 2749782-2756507 Arabidopsis thaliana
AT3G09030 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2749782-2754781 Arabidopsis thaliana
AT3G09030 5.0kb downstream 5.0kb downstream 6726 true Chr3: 2754782-2761507 Arabidopsis thaliana
AT3G09030 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2756508-2761507 Arabidopsis thaliana
AT3G09030 10.0kb upstream 10.0kb upstream 11726 true Chr3: 2744782-2756507 Arabidopsis thaliana
AT3G09030 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2744782-2754781 Arabidopsis thaliana
AT3G09030 10.0kb downstream 10.0kb downstream 11726 true Chr3: 2754782-2766507 Arabidopsis thaliana
AT3G09030 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2756508-2766507 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363702 5261 Brassicaceae View MSA
123834596 5264 Brassicales-Malvales View MSA
124339731 5266 SBM View MSA
124241759 5268 Malvidae View MSA
124065246 5270 Rosid View MSA
123739700 5271 Pentapetalae View MSA
122793566 5272 Eudicot View MSA
122045372 5273 Angiosperm View MSA
121348328 5274 Embryophyte View MSA
123380822 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.35       High
cufflinks 5.168       Low
cufflinks 7.51        
cufflinks 5.926        
cufflinks 10.269       High
cufflinks 5.674        

0 Strain