Gene : AT3G08570 A. thaliana TAIR10
Defline:  (1 of 24) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  805
Name:  ? AT3G08570 Secondary Identifier:  ? PAC:19662796
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G08570 0.5kb upstream 0.5kb upstream 2655 true Chr3: 2602258-2604912 Arabidopsis thaliana
AT3G08570 0.5kb upstream 0.5kb upstream 500 false Chr3: 2604413-2604912 Arabidopsis thaliana
AT3G08570 0.5kb downstream 0.5kb downstream 2655 true Chr3: 2601758-2604412 Arabidopsis thaliana
AT3G08570 0.5kb downstream 0.5kb downstream 500 false Chr3: 2601758-2602257 Arabidopsis thaliana
AT3G08570 1.0kb upstream 1.0kb upstream 3155 true Chr3: 2602258-2605412 Arabidopsis thaliana
AT3G08570 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2604413-2605412 Arabidopsis thaliana
AT3G08570 1.0kb downstream 1.0kb downstream 3155 true Chr3: 2601258-2604412 Arabidopsis thaliana
AT3G08570 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2601258-2602257 Arabidopsis thaliana
AT3G08570 2.0kb upstream 2.0kb upstream 4155 true Chr3: 2602258-2606412 Arabidopsis thaliana
AT3G08570 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2604413-2606412 Arabidopsis thaliana
AT3G08570 2.0kb downstream 2.0kb downstream 4155 true Chr3: 2600258-2604412 Arabidopsis thaliana
AT3G08570 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2600258-2602257 Arabidopsis thaliana
AT3G08570 5.0kb upstream 5.0kb upstream 7155 true Chr3: 2602258-2609412 Arabidopsis thaliana
AT3G08570 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2604413-2609412 Arabidopsis thaliana
AT3G08570 5.0kb downstream 5.0kb downstream 7155 true Chr3: 2597258-2604412 Arabidopsis thaliana
AT3G08570 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2597258-2602257 Arabidopsis thaliana
AT3G08570 10.0kb upstream 10.0kb upstream 12155 true Chr3: 2602258-2614412 Arabidopsis thaliana
AT3G08570 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2604413-2614412 Arabidopsis thaliana
AT3G08570 10.0kb downstream 10.0kb downstream 12155 true Chr3: 2592258-2604412 Arabidopsis thaliana
AT3G08570 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2592258-2602257 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361896 5261 Brassicaceae View MSA
123838715 5264 Brassicales-Malvales View MSA
124342130 5266 SBM View MSA
124238909 5268 Malvidae View MSA
124066812 5270 Rosid View MSA
123740555 5271 Pentapetalae View MSA
122769985 5272 Eudicot View MSA
122044004 5273 Angiosperm View MSA
121350656 5274 Embryophyte View MSA
123381839 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.767       Low
cufflinks 2.072        
cufflinks 0.945        
cufflinks 3.003       High
cufflinks 0.795        
cufflinks 1.876        

0 Strain